Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN26417

FASTA Sequence
Unigene ID: UN26417Length: 774  SNP
ACGATAAAAGGTGGCTAATGCACCTGCAAATGTAATTCCATTAACTTGGGTTCACATCAGTTGTACTAAACTTCCTTGGATGATTA
CAATCACTGGGTTCTTCTTATCTCACTCTAGTTCTTTCTTTCTTTTCAGGATGAATCAAGACACACACTGATTATCATATTAATTT
ATCACAACAACAAAAAGCAAAAGAAAAGTGTGCTCTCACTAGTTCAGTAGCGACCCGGTCTTGGAGGGTTGATATCTAGCGCCGAA
CTCAGAACCCTTCTACTGTACTCCAAACCGGTTCCATTTGAAACCCCTGGCGGAGGTGGCTCTTGAGTGTAATCAAGAGGCATGGG
AGAAGGTGAAGACATCAACTGTGACGAGAATCTCTCCGAATGGTGATGATCGAAACTCAGAGAATGAGGTCTTGTCCTGTGACCGG
AACCTGACTGTGCTTTGTCTTGTCCAGATATGGCGAATTTGAGAGTTCGATTGAAGAGAGAGACAAGACCGGAGAAGAGCTTGACG
GCGTAGTCGGCGATCTCTTCAGTCTCATACTCTGCGAACGCGAAGCCTTTTGGTTTATCGGTTTCTTTATCGCGAGGGATGTGTAG
ATCGGTTACTCTCCCAGCTTGGATCAAGATGTCATACAACACCCTATCGCTTACTCGCTCGTCCAGGTTCCCTATGTAGACGGTAC
AGTTGGTGTTCCCCGACATGGATTACCCTAAAAAAAGAGGAGAAGATGAAAAGAGATGCTACTGTTTCCAAGATTCGTTTCCGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874610 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]7072e-072
NP_192749 RNA recognition motif-containing protein [Arabidopsis thaliana]4813e-046
ABC86742 RNA recognition motif-containing protein [Vitis pseudoreticulata]4258e-040
XP_002271789 PREDICTED: hypothetical protein [Vitis vinifera]4258e-040
XP_002329210 predicted protein [Populus trichocarpa]4123e-038

Swiss-Prot top hits (Blast detail)Scoree value
Q09442 Splicing factor 3B subunit 41801e-012
O14102 Spliceosome-associated protein 491791e-012
Q15427 Splicing factor 3B subunit 41791e-012
Q8QZY9 Splicing factor 3B subunit 41791e-012
Q6AYL5 Splicing factor 3B subunit 41791e-012

TrEMBL top hits (Blast detail)Scoree value
Q8GW25 At4g101004812e-046
Q2I310 RNA recognition motif-containing protein4256e-040
B9N1M6 Predicted protein4122e-038
B7FLZ6 Putative uncharacterized protein (Fragment)3971e-036
A5BAJ7 Putative uncharacterized protein3862e-035

Arabidopsis top hits (Blast detail)Scoree value
AT4G10110.1 RNA recognition motif (RRM)-containing protein4811e-048
AT2G18510.1 emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding1763e-013
AT3G47120.1 RNA recognition motif (RRM)-containing protein1144e-006
AT1G73530.1 RNA recognition motif (RRM)-containing protein1135e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
104  57%
 
112  29%
 
91  14%

Unigene MembersMember information