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Information for unigene UN26449

FASTA Sequence
Unigene ID: UN26449Length: 887 SSR 
GAATTGAGTTTGTCGCACTATCAAAAAGTTCCCCTTGTTGACATCAAGGGAGTACGTCCTTGCCTGGAAGTTGTGGCAGGGAAACA
AGGACAACTTTTTCTGTTTCACTAAGGAATGTGATCGTGATTTGGTACCGCGACAGAAAAAGTATGTCCGTGTCAGTCACTTTAGA
TCTGGTTGGCGGATCAGCAGAGTTCCGGGAAGAAATGCTTGTGAGATCAAAATGTTCCACCAGGAAAATGCAGGGTTAAATGTTGA
GATGGCCAAGCTCGCTTTCTCTAAAGGCATTTGGAGTTACGTTTCTAAGATGGACAACGCGTTTCGTAATTACGTTGCAATCACTC
ACAGACCCCAAGGGTCCGTTTTATCTGCCCTCACCTTAATCGCAGAGGTTCCATCAGAGTTGGAAAGCCAGACAGTGGATGTCACA
GCCTCCATGGGAACTAACGGTGGTGAAAGAATATCGACTCAAGTAGCTATACAGAAGAAGAAGAAGATATTGAGAAAGCCGTCAAA
GAAACTGATAGCAAAAGGTCTGGTCCTTGTGGGTGGTGCTGCTATCTGTTTGTCACGTGGTCACTCGGCCTTGGGTGCTAAAGTAG
CATTGGCTTACCTCTTGACCAAGCTCAACAAACGTGCTACTCCTCTCAAGCAGCAGACCACCCACAACTCCAGTATTTAAAAGTAA
GAACCCAACCCCCTTGTCATTGGGATTGGGGGTTACATTAAAATGACTCAAAACCACATGAATTCTGATAGGTTTTTTTGTCTTAC
AAAGTGTGTTGTACCCTTTAGCTGGAAGATATGCATTCATATGGATGTAATAGTTTATATGTGAATCAGACAAAGTTCTACAATTG
TCTTTGATATAATGGAATTTAGATGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564705 putative polyketide cyclase/dehydrase and lipid transport-like protein [Arabidopsis thaliana]8301e-086
XP_002894547 hypothetical protein ARALYDRAFT_314809 [Arabidopsis lyrata subsp. lyrata]7951e-082
NP_850574 lipid-binding START domain-containing protein [Arabidopsis thaliana]7799e-081
NP_566443 lipid-binding START domain-containing protein [Arabidopsis thaliana]7799e-081
BAC43323 unknown protein [Arabidopsis thaliana]7753e-080

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q93YV2 Putative membrane related protein CP58308e-087
Q94C36 At3g130627796e-081
Q3EB74 At3g130627752e-080
Q8GWN9 Putative uncharacterized protein7752e-080
B9RHS6 Phosphatidylcholine transfer protein, putative6408e-065

Arabidopsis top hits (Blast detail)Scoree value
AT1G55960.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13062.2); Has 177 Blast hits to 177 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).8314e-089
AT3G13062.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 230 Blast hits to 230 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).7803e-083
AT3G13062.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 235 Blast hits to 235 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).7803e-083
AT3G13062.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 235 Blast hits to 235 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).7751e-082
AT1G64720.1 CP51862e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  25%
 
122  50%
 
101  25%

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