Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN26466

FASTA Sequence
Unigene ID: UN26466Length: 1736  SNP
GTCATATATATCAAACCCGGTTTAAACAAAACATAACCAATAAAACCGGACCACGATGATATAACAAGTCCAGACCCAGCTCTATT
CAAAAGTCTGATCCACCACCATAAAGCACAACAAACAAGTCTTTCATTTAACTTTTACACATTATTTTTAAACATCAGAGATTCAG
CCCTCATTCTCTTCACATCTTTTCCTTATTCCTCATCGTCATCATCTTCCTTCTTTTTCCTTCATCCTCTCAACCAAGTCATTATA
TATAAGCTTTAAATTTATGTCTGATATTGGTTGAGAACTGAGATCTTCTGAAAGAGCAGATTGAAAATCTTCAAACATCCATGAGG
CGACCATGGAAACCTTCCTTGACTTCATCGCATCCTTTACGCGACTCTTGTCCTCGTGATACTGCTTCTCTAATTCTTCCGTGATA
TCTTCGAATAGGTCTTTCGGAGTTGAGCCAGACAAATTAGATGCAACAGCTTGGTATTGAGGCAAGTCTCTTACCTCAATGCAATA
CTCCAACCAATACGTCTTGGCTGTAAGGATGCCAGCAGCGACATGTTCTTCCAATAGTGTACGAAATGCATCACGGTTTTTTCTCT
CAGCCCGCCTAACATGTTCTTTCTCTACCCTCTTCAGCTCCTCTTCTTCCTTCTCCAGGTCATTAATGTAATCCTCAAAACCAATC
AAACGATCTATCTTTTCAAGAGATGCGCTTCTTTCATCATCCTCCAGTCTATCCTGAATTTTGCGCCATTGTGTACTGGCTTTGAT
ATAGTCACAGGTTTCAAGAAACTTCCGATATTCTGCCATCTTCTGCCGATGTTCTGCCACTGCCTTCTCTCTTTCCTTCCTCTCAA
GTTCCACAATATAATTGTCAAAAAGATCTTCACGATCCCTTGGGCGATCAACAGCTTTAAAACGCTCATCATTTTCAAACAAACTC
AAAGCTTTGCTCCATTTCAGGGATGATGATAATTCTTCACACTCCTCTAGCATCTTGACAAATTCTTCCCGCGCTTTCTTCTGTCT
CCATCGCCTTTCCTCAGCTTCCACTTTTTTCCTTTGACCGAGATACTCGTTAAAAGCTTGTTTCCGCTCACCGAGTGTCCTCAAAG
CACCATATCTTTTATCATGAACAATCTCTTTAGTTGTCTGTTCCCATGTCCAGTCGGACTGAACATTTACAGATTCCAAAAGAGAC
TTGAAAGCAGCTTTAGCCTCCTGCTTAGTAGCATACATCATGGGTTCCTCAACGTTTGATTTGTCACCAGCAGCTGTCATATTGGA
TTTTCCATTTACCGACATTTCCTTATTATCAACCTCATTGTTTGGTGCGGGCGCTCCATCCTTCGATTCATATGCCCCCTGAGACG
GTAAATTATCCATTTTCATTGCAGTAGCCTCAGTATCACTAGTTGCAGCTGACTTTGGAGTAACAGGAGTAGCAGGGGGAGGACGG
GTGACAGGTACAGCCAAACCCGCTGGAATAGGACTTGAAGAATGCGCAGGAATTATTGGAGATGTGCTGGGAACAACTGCGGTCAC
AGGAGTGCTAACAGCTAGATCAGATGAGGATGCAGCAATGTGGGATAGAGAGGTCGATCCAGGTTCGGAATGGGACCTCTTTGCAC
TAGCTAATTCGGCTTGTTCCCGAGCTAACTTTAAATCTTCCGGAATTGTCCACTTAGACTCCTTTGTAACCTTGTTATAATAATAT
TTCCTTCCTTCAGCTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002891304 hypothetical protein ARALYDRAFT_891421 [Arabidopsis lyrata subsp. lyrata]22166e-247
NP_175113 pre-mRNA-processing protein 40A [Arabidopsis thaliana]21987e-245
NP_001117438 pre-mRNA-processing protein 40A [Arabidopsis thaliana]21987e-245
BAH19565 AT1G44910 [Arabidopsis thaliana]21987e-245
AAF69150 F27F5.2 [Arabidopsis thaliana]15501e-169

Swiss-Prot top hits (Blast detail)Scoree value
O75400 Pre-mRNA-processing factor 40 homolog A5541e-055
Q9R1C7 Pre-mRNA-processing factor 40 homolog A5513e-055
Q80W14 Pre-mRNA-processing factor 40 homolog B5352e-053
Q6NWY9 Pre-mRNA-processing factor 40 homolog B5291e-052
O14176 Pre-mRNA-processing protein prp404232e-040

TrEMBL top hits (Blast detail)Scoree value
B3H7M9 Uncharacterized protein At1g44910.221985e-245
B6EUA9 Putative uncharacterized protein At1g44910.121985e-245
B9DFP8 AT1G44910 protein (Fragment)21985e-245
Q9MAL4 F27F5.215507e-170
B9IBN8 Predicted protein14862e-162

Arabidopsis top hits (Blast detail)Scoree value
AT1G44910.1 protein binding21983e-247
AT1G44910.2 protein binding21983e-247
AT3G19670.1 protein binding10371e-112
AT3G19840.1 FF domain-containing protein / WW domain-containing protein1231e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
93  33%
 
101  11%
 
62  22%
 
72  22%
 
201  11%

Unigene MembersMember information