RadishBase

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Information for unigene UN26474

FASTA Sequence

Unigene ID: UN26474	Length: 1378	SSR
ATGATGAACAACACATTAAAAATGTCTAAATACATGTCAATATTACAAATAAATAAAAGAATGTATTCAAGGACCTACCATCCAAT ACCATATTACAGAATCAAATCAATTAAAACTGAAATGAACAGAAGTAACTTACAAGTAACCAAAAGTACATCTGGCCAGCTATGAT GAAAAAACTCAAAGTTGGATAAAAAAAATGAATCAAACTATGCTTCTGTTGTTTTGCCTTTTGTACAGTTGGCCCCACATTGCTTC CTTAGTCTTCAAGTGAAAGTTATTGTAATTACCTTTCTCCCATCTTTACATAAACGCACCTGATTCAACCACCATCGTTGCAGCCG CTTGATGTTTCCCGTTCTGTTTCACTTGGTGCTGTGACCAGTACCTATGTGCTGCCAAGACTCTGTCAAGCAGTTCTTGAGGCACT GGCTCTCCTCTTCGTTGCTGCGGTGATATACTTGCCGTGTGAACCAATGTTTTCCACTTGTCCTTCAAGTCCACGTAAGTTCGATG ACTTGCATCATCAAAAGAACGTAATTTCACATCACGCCACCTTCCAGTCCCAAGTTCCTCAACTGCATGCACTAGAGATTCTACCT CTGTAACAGAGAACGGTCTCCTGGTTCTGCGCTGTGAAACCTCTGTACGCTTAGGTTTCTCGTTAAGTGGGACAATTATTGCAAGA GCCTCAGGTTCCAAGGCTGAAACAGGAACTATAGCTCTTGAATCTGGTGACGGTTGTTGTTGTTGTTCATCAGCTGTTATGTCACT CTGATACGGAACTAGCTCCTGGCTATTCTCCACACAGGTTCCAACATTAATCACGTGATCTGCATCTTGGAGAAGGAAAGGACTTG TAGAATCTAAAGCGGGAGAAGAAGCTGCAGACCTTTCTGACAAATTTGTTGAATCAGTTGGCATAGAAATGGCAGCATTTTCAGAG GAACCAGGCTCCAAGGTGAAGCCAAGGTTGTCTAGATTTTCTCTACAAGAAAGACCAGTCTGTGAGAGAGTGTTACTATCATCTCT AACCTTCTTCCCTTGGACCAACACACCAATATGTATCCCATCACCGAGTAAAGAAGTGATAGCCTCCATCACCGTCCTCTTGAGTG AGCCTACTGTTGCTGTTTCTGGAACTTCAATAAAAAGCTCCGGAATCCTAAAGGACTTGATGCTCAACTTTACTGACTCTCCCTTC ACAGGTGAATTGGTAACACTTTCACTACTGAGTCCTCCTCCTCCATCAGAATATACGACCAACCCTTTGTCACACAATCTTCTCTT CCTACGAACGCTCTCATGCTTCCATTGGTTGTAACTATAACATAGTTTTCTCTTGCGGTATAGAGCCTTTAAACAACCATCTGTTC TC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_196886 Telomere repeat-binding protein 4 [Arabidopsis thaliana]	1137	6e-122
BAJ34614 unnamed protein product [Thellungiella halophila]	1135	1e-121
BAE99080 telomeric DNA-binding protein 1 [Arabidopsis thaliana]	1134	1e-121
XP_002871588 hypothetical protein ARALYDRAFT_488205 [Arabidopsis lyrata subsp. lyrata]	1130	4e-121
AAC24592 H-protein promoter binding factor-1 [Arabidopsis thaliana]	1124	2e-120

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FFY9 Telomere repeat-binding protein 4	1137	2e-123
Q9C7B1 Telomere repeat-binding protein 3	1122	1e-121
Q8L7L8 Telomere repeat-binding protein 1	663	2e-068
Q9LL45 Telomere-binding protein 1	649	9e-067
Q6R0E3 Telomere repeat-binding protein 5	486	7e-048

TrEMBL top hits (Blast detail)	Score	e value
B5TFM5 Putative double-strand telomere binding protein 1	985	2e-104
A5BV88 Putative uncharacterized protein	954	6e-101
Q9FNS1 MYB-like DNA-binding protein	836	3e-087
Q08707 BPF-1 protein	825	6e-086
B9T8J2 Putative uncharacterized protein	812	2e-084

Arabidopsis top hits (Blast detail)	Score	e value
AT5G13820.1 TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding	1138	2e-124
AT3G12560.1 TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding	1122	1e-122
AT5G59430.1 TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding	663	2e-069
AT5G59430.2 TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding	663	2e-069
AT5G59430.4 TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding	663	2e-069

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			25%


11	6			75%

Unigene Members	Member information