RadishBase

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Information for unigene UN26479

FASTA Sequence

Unigene ID: UN26479	Length: 1295		SNP
GCAGCGGGCGGGGGAGAAGGATTGTACCCACTATATGCAAACCAGAACTTGTAAATTTGGAGAGGGCTGCAAGTTTGATCATCCTA TTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGCACCAGTTGTTCCAAATGATGAGTACCCTGAGAGACCAGGTGAACCA GATTGTCCGTACTATGTAAAAACGCAACGTTGCAAATATGGTGTAAGGTGCAAGTTTAATCATCCGAAAACAGCGGCTGCAGTTAC TGTTGAAAATCCAGATGCATTACCTGAGAGGCCTTCTGAGGCCCCGTGCACGTTCTACATGAAGACTGGAAAATGTAAATTTGGTT TAACATGCAAGTTTCACCACCCAAAGGATATCCAGCTACCATCATCTAGTCAAGATAATGGTAGTACTGAGGCTGTAACCAGTGAT CCTGATGCTATCAACAATCCGCATGTGACATTTGCCCCAGCAGCATATCACAACTCGAAGGGACTACCTGTAAGGCCGGGTGAAGT AGACTGCCCGTTCTATCTCAAGACGGGAAGCTGCAAGTATGGCGCCACCTGTCGTTACAATCACCCTGAGAGGACTGCATTCACTC CCCAAGCTACTGGGATAAACTATCCTCTAGTGTCCCCAACCGCTGCGAGTGTAAACCTTGGGTTGATTAACTCAGCTGCCTCCCTC TATCAGACCCTTGCTCAACCCACGCTAGGAGCGCTTACAGCAACTTATCCCCAAAGGCCTGGACAACCAGAATGTGACTACTACAT GAAGACAGGGGAGTGCAAGTTTGGAGAGAGGTGCAGGTTCCATCACCCAGCAGATAGGTTAAATGCAACAAGCAAACAAGCTCCTC AACAGCCGAATGTAAAGCTGAGTCTTGCAGGGTATCCTAGAAGAGAGGGTGCGCAAAACTGCCCGTACTACATGAAGACAGGGACT TGCAAGTATGGGGCAACGTGTAAGTTTGACCATCCTCCTCCAGGTGAAGTTATGGCTAAAACCGCTTCAGAAGCTGATGCTGCTCC TCCTGGTGAAGGAACTGACACGACGACTCAGTGAGTAGGCAGCTATGTGTAAGATAAGATGATAAGCGTGTTGTAATCTTGTTTTA CTTGCTATGTTCTCTGCATCTGTTTCTCCTTTCTCAAATCCCTTTTATCATATCCTAAAACCAAAAGAAGAGATTGATTGAGTCTA CTTTACTTGGTATCTTCTCTACAATTGGTCAAGCAGTAGAGCTTCTATGTTTATAAAGGCAACTAGTGGGTTCAGTTTCACTATTT CCATT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884918 enhancer of ag-4 1 [Arabidopsis lyrata subsp. lyrata]	1719	2e-189
NP_187874 zinc finger CCCH domain-containing protein 37 [Arabidopsis thaliana]	1692	2e-186
BAF01019 floral homeotic protein HUA1 [Arabidopsis thaliana]	1692	2e-186
AAG51026 zinc finger protein, putative, 5' partial; 146-2518 [Arabidopsis thaliana]	1560	5e-171
XP_002315096 predicted protein [Populus trichocarpa]	1305	2e-141

Swiss-Prot top hits (Blast detail)	Score	e value
Q941Q3 Zinc finger CCCH domain-containing protein 37	1692	1e-187
Q5ZDJ6 Zinc finger CCCH domain-containing protein 8	966	1e-103
Q84W91 Zinc finger CCCH domain-containing protein 32	284	2e-024
Q5JLB5 Zinc finger CCCH domain-containing protein 12	278	9e-024
Q2R4J4 Zinc finger CCCH domain-containing protein 63	278	9e-024

TrEMBL top hits (Blast detail)	Score	e value
B9HYE1 Predicted protein	1305	1e-141
B9SRN9 Putative uncharacterized protein	1254	1e-135
Q9LTW7 Zinc finger protein-like	1058	5e-113
A5BX90 Putative uncharacterized protein	649	1e-065
C0PBI7 Putative uncharacterized protein	602	4e-060

Arabidopsis top hits (Blast detail)	Score	e value
AT3G12680.1 HUA1 (ENHANCER OF AG-4 1); RNA binding	1692	9e-189
AT2G47850.1 zinc finger (CCCH-type) family protein	284	2e-025
AT2G47850.2 zinc finger (CCCH-type) family protein	284	2e-025
AT2G47850.3 zinc finger (CCCH-type) family protein	284	2e-025
AT3G02830.1 ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding	268	1e-023

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			22%


18	1			11%


9	2			22%


10	2			22%


8	2			22%

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