RadishBase

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Information for unigene UN26535

FASTA Sequence

Unigene ID: UN26535	Length: 1203	SSR
ATCTTCCTCCTCCTCCTCCTCCTCCTTGGCATCAATTCGCTCAAAGGGTGTTCTGTCATATTAGACGAAAGGAGGAAGAAAATGGA GGAGTTTGTGGACCATTACTTAGTTCTAGGGCTACCCTCTGGAGAAGAAGCTCAGAATCTTAGCGAGAAGGATATTTCAAAAGCAT ACAGGGTGAAAGCTCTGGACTTGCATCCGGACAAACGCCCAGACGATCCCGATGCTCACGAGAAATTCCAGAGGCTCAAGACATCT TACGAGGTTCTCAAAGACGACAAAGCTAAGAAGCTGTTTGACGATCTTCTTAGGATCCAGCGCGAGAAACAGCACAAGAAATCGCA GGTGGATTCCAAGAGGCGCAAGATGATGTCTGATCTGGAGGAAAGGGAGCGTTCCGGTTTTGCGCCTAGTCGTGCGTCGTCTAGAC CTTATGACGAAGAGGAGAGAATCGCAAGGAAGCTTAAGGAGGAGGTGGATAGGATACGTGCGCAACATGCAAAGAAGAGAGGCGGT TTTGAAACTCCTCCTGAGAGTGGTGGTGGTGGTGGAGATGGAAAGAGAAGAGAAAAAGATAGAAGTGGAGGTGGAGCTAGCGTTCA GCTAGATAAAGAGAGAGTGTTGAAGGTTTCTTGGGAAACGATTGGTGAAGGGTATGGTGCGGGAAGGCTCAGAGAAGTGTTTTCAG AGTTTGGTGAGGTTGAAGATGTTGTTATCAGGAGTACCAAGAAGAAAGGCTCCTCCGCTCTCATTGTAATGGCTACTAAAGATGGA GCTGTAGCAGCGACGAGAACATTGTGTGGGGATCTTTCTAACCCATTGCTAGTTGTACCTCTTCAAAAAGCAGCACAAACCGATTT TCCGACCGCTAAGAAATCTGCAGAAGCAGAACCGCAGAGTAACATAGTTGGTGCTGGTTACCAAGCTTATGAAGACCAGGTCATGG AAAGACTGAAAAAGGCGGCTATGAACCAGAAATGATAGGAGTATAATGAAGCCTAGGCGTAATGAAGCCACATGATGTCAAGAACT AAGCTTACTTCAAGACCAAAGTGGACGTCTCCATTTTAATATCACAGACTCGTGGTCCTTGCATGTTCTTTTTTTCTTGTAATGAT ATATAGAGTTCTTCAACAAGTATTTGTGGACATCCATTGTCATATGACTCATATCAATGATTGTTAGAGAAACTATGATTCTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197749 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	1208	3e-130
XP_002874140 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]	1202	1e-129
BAA97241 unnamed protein product [Arabidopsis thaliana]	1185	1e-127
ABK25187 unknown [Picea sitchensis]	629	4e-063
CBI25124 unnamed protein product [Vitis vinifera]	529	1e-051

Swiss-Prot top hits (Blast detail)	Score	e value
Q9NVM6 DnaJ homolog subfamily C member 17	267	2e-022
Q91WT4 DnaJ homolog subfamily C member 17	261	8e-022
Q2KI83 DnaJ homolog subfamily C member 17	260	1e-021
Q9P7C6 Pre-mRNA-splicing factor cwc23	187	3e-013
Q9UBS4 DnaJ homolog subfamily B member 11	177	4e-012

TrEMBL top hits (Blast detail)	Score	e value
Q8L7M3 At5g23590	1208	2e-130
Q9LT05 Dbj\|BAA91724.1	1185	9e-128
A9NX26 Putative uncharacterized protein	629	3e-063
B7FJY1 Putative uncharacterized protein	514	6e-050
Q1KSA9 Putative uncharacterized protein	459	1e-043

Arabidopsis top hits (Blast detail)	Score	e value
AT5G23590.1 DNAJ heat shock N-terminal domain-containing protein	1208	1e-132
AT5G23590.2 DNAJ heat shock N-terminal domain-containing protein	1208	1e-132
AT1G59980.1 ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding	148	9e-010
AT5G48030.1 GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding	146	1e-009
AT1G79030.1 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	139	9e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	3			50%


20	2			33%


19	1			17%

Unigene Members	Member information