RadishBase

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Information for unigene UN26574

FASTA Sequence

Unigene ID: UN26574	Length: 855	SSR
GAGAGGAAGAAGCGGTGTGCAGGATCTGTCTGGACGTGTGCGAAGAAGGCAACACTCTGAAGATGGAGTGCAGCTGCAAAGGCGAT CTCAGACTTGTTCACGCGTGTGCCATCAAGTGGTTTAGCACAAAGGGGACGAGAACCTGTGACGTCTGTAGACGAGAAGTCAAGAA CCTACCGGTTATATTGCTTCGCGTGCCTACAACTAATCAACTGAACAGCAGACGTGGTGGTGATCGCAGCAGTCAACAGAATATGC AGTCACAAACCGCTAGTGCATGGCAAGAGTTTGTGGTGCTGGTTCTAATCAGCACAGTCTGTTACTTCTTCTTCCTCGAGCAATTA CTAATTCGGGATCTCAGCACGCAAGCTATCTACATAGCAGGACCATTCTCCTTAACGTTAGGCCTCTTAGCATCTGTTTTTGCCAT TGTCCTAGCTATCAGAGAATACATTTGGACATACGCAGCGCTTGAGTTTGCGCTTGTAGGCATTTTGGTTCATCTATTATATTCTA CAGTGAGACTACCTCCGATCTATTCTATACTATTTGCAGGGATTCTTGGTTTTGGGATAGCAGTGTGCCTAAACTCCTTGTACCTT CATTATTTCGCTTGGCGTATTCGTGTTGCAGAGAACTCAAATCCAGTGTGAATACGCCTATATATCCTTTGGTGTGTGCTTGTATT CTAGAAAAAAAAAGAAGAAGAAGAAGAAGAAGGTGTTTCATCTGATCCAGCAGTGACATGTAAAATGTATATATATGTCCACTCTT CTTTAAACGTGTTGTAAGTTGTAAAAGAGAAACTATTGTATCAGGTGAAAAGAGTTTTAATGTATGTGATCTGTTTGCACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002882464 hypothetical protein ARALYDRAFT_477933 [Arabidopsis lyrata subsp. lyrata]	969	8e-103
NP_566281 RING/U-box domain-containing protein [Arabidopsis thaliana]	967	1e-102
AAM65991 unknown [Arabidopsis thaliana]	967	1e-102
NP_001030648 RING/U-box domain-containing protein [Arabidopsis thaliana]	967	1e-102
ADK63404 C3HC4 type zinc finger protein [Brassica rapa]	830	1e-086

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q2V3X9 Uncharacterized protein At3g06330.2	967	1e-102
Q8L9G0 Putative uncharacterized protein	967	1e-102
Q9SQT6 AT3g06330/F24P17_21	967	1e-102
Q1H5A5 At5g18760	817	2e-085
Q8GWH7 Putative uncharacterized protein At5g18760/F17K4_10	817	2e-085

Arabidopsis top hits (Blast detail)	Score	e value
AT3G06330.1 zinc finger (C3HC4-type RING finger) family protein	968	4e-105
AT3G06330.2 zinc finger (C3HC4-type RING finger) family protein	968	4e-105
AT5G18760.1 zinc finger (C3HC4-type RING finger) family protein	818	1e-087
AT3G06330.3 zinc finger (C3HC4-type RING finger) family protein	647	7e-068
AT5G60580.1 zinc finger (C3HC4-type RING finger) family protein	523	2e-053

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			50%


9	2			50%

Unigene Members	Member information