RadishBase

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Information for unigene UN26600

FASTA Sequence

Unigene ID: UN26600	Length: 1657	SSR
TACATAACAATGGCAATTAAGTAGAACTGGTCGAGAACAGTAATGTGAACGACACTGTCAATTTACAATGCACAACAACAGTCTTT ACTCTTTTCATTTTAGTTTTTGTTTTGACATAACACAACACATAAGAAGGCTTATTATCTCTGAAGCAAGCCTCCTTTTGGTCATA TAACCTTTCTTATTTTTCTTTTCTTAAGAATCAGAAACTCTTCTTATGCTGCTCCCACACTTTTGAACTTCCGACTCCGTAATATA TTATATATATGGCAGAATTGCACAACAGAAAACATCTTCCCATCTCTTTGCCAACAAGATGCTGGCACTTGTTTTTATTAGCTAGA ACTAGAACCAGCCGCACATGTTCCTTTCACACCTCTTTCATTCGAAGAATGTTCATCACCTGCTTCTGATCTGTTACGCTCATTGT TTGTTTCAGCAGGAGTCTGATTCTCTGAGCCATTTGATGATGATACAGATGCAGTGCCAGGTCTACTACTACTACTAGTGTTTTCT CTCGTTTCTAGACGTTCCATCATGCGGGACACAGTGGCGATTCCAGCGCTGACCTCTCTTTTAACCTCAGAGCCAAGTTCTGCCAT GGAGGTGTTGCGAGAAAAAAACCTATCTTTCCAGTTCCTTGTGTTCTTTGTTATCGACTCTTTGTATCTCGTCGAAACAGAGGTTA GACGAGACTTCAAAGATTCTGAAAATGATTGGAGTTCGGATGGTCCAGCTCTATCTTGATCACTTGGGGAAGATTGATTAGGAGAC CTGCTGTTTGAATCAGATGCCGAAGGAGAAACCTGGCGAGGATGAGAAGAAGCTGCTGCTGGTGGCTGCATGTTTGACTGAAGAGA ACCCTCCCCTACAGAAGCATTGTGAGCAAGGTTTGTGACTGTGTCACTCTCGTCTCTCTGAGATGGAGAGGAAAGCATGGGAGGAG GAGGAGAAGGCGGAGGAGGAGAGAACACCATGAACTGTGGATGACCACCTTGAGTTGACGATGACCTGCTTCTGTGGCCTTCCCTT CTAGTCCCATGCCTTGCTCGGCCCATAGCAGCAGCAGCAGCCAAGTGCTGGATGATGCGTTCTTCAATCTCTGCATTATCCACACC CGCTGGGAGATGCTGTAATTCAAAATCACCGAGAGTAGGATGACGAAATATGGTGGCGTTTCTAGATGGATTGAAGCGGAGATTCC TCTCCTGTACAACAGCTTCAAGCAATTCGTGACCAGTGGGGTCTTTGAGACTAATAGATTGCCAACACATAGGGCACTGTGAACTC CTTTGACACCACTCAAGGATGCATTGAAGATGATACTCATGCTTGCAACTAGTCAAAGTAGAAGGATCGGAATCGCAGAAGGGATC GAGACAGATGCTACAAGCATCATCACAAGCCTCTTGGATTCCCCCTTCCACAAACGCTGCTGCTGATATCATATTCCCTTCCGACG TCGTCGTCGTTGTCGTATCTTCAACTCCCTCCATTGAAATCGCGATGGTGAAGAGAAGACGATCGATGAAATATATAATCTAGGGT TGAGAGAGAAAACGAAACCCTCGATTCATGATATGATACTACAAAGACTCTTCCTTTTCTTCTTCTTCTTCTTCTCTGCGCGTCGT CGTCGTCTCTGTTGTTGACACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ33931 unnamed protein product [Thellungiella halophila]	1558	1e-170
XP_002871983 hypothetical protein ARALYDRAFT_489047 [Arabidopsis lyrata subsp. lyrata]	1555	2e-170
NP_851051 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]	1550	9e-170
NP_568410 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]	1549	1e-169
BAH19547 AT5G22000 [Arabidopsis thaliana]	1545	4e-169

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZT42 E3 ubiquitin-protein ligase RHF2A	1549	5e-171
Q4TU14 E3 ubiquitin-protein ligase RHF1A	296	1e-025
Q75JC9 Uncharacterized protein DDB_G0271670	155	2e-009

TrEMBL top hits (Blast detail)	Score	e value
C6TB16 Putative uncharacterized protein	1179	7e-127
Q2HT04 Zinc finger, RING-type	1138	4e-122
B9IIH4 Predicted protein	1023	8e-109
B9H9M7 Predicted protein	1008	4e-107
B9VRL0 Putative zinc ion binding protein	991	4e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT5G22000.2 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding	1573	7e-175
AT5G22000.1 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding	1572	9e-175
AT5G22000.3 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding	1572	9e-175
AT4G14220.1 RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding	296	9e-027
AT5G41350.1 zinc finger (C3HC4-type RING finger) family protein	133	7e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	3			60%


18	1			20%


12	1			20%

Unigene Members	Member information