Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN26662

FASTA Sequence
Unigene ID: UN26662Length: 1469 SSR 
TCTAATAAATAACTCTCTCTCTCTCCCCGTCTCCCGTCTTCGGCTACGTAGACATGGACGTCGAACATAACAACTCCGGCCACATC
GGTAGACCAACGGTGGATATTCTACCGAGAAAGCTTCTTTCCTCCGCCACGTCTCCTTCAAGTCCCTGTCTTGGCGACAAAGCTCA
GAGAGAGTGTTGTCACGACTCCGACTCCGACGATCCTTACGCCGGCGACCATTTCCGGATGTACGAATTCAAGATCCGACGGTGCA
CGCGTAGCCGTAGCCACGACTGGACCGACTGTCCTTTCGCTCATCCCGGCGAAAAGGCTCGTCGCCGCGACCCTCGCCGGTATCAC
TACACCGGCGAAGTCTGTTCCGAGTTTCGCAACGGCGGCGGCGATTGTAGCCGCGGTGAGTTGTGCGGCTTCGCGCACGGCGTTTT
CGAGTGTTGGCTCCACCCGAGTCGTTACCGTACGGAAGCGTGCAAAGACGGTAAGCACTGTAAGAGAAAAATATGTTTCTTCGCTC
ACTCTCCACGTCAGCTTAGAGTTCTCCCGCCGTCGGAAAATTTCGTCTCCGGCGGAGGTGGATCGTCGGCGTCGGTGTTGAGTAAT
AAGAATAACCGGTGCTGTATGTTTTGTTCCCACTCTCCCACGAGCACTCTCCTGGATTTTTCACGATCACCGACGTCATCTCCGCC
GTTATCTCCGGCTGATAAATCTGCCGTGTTTTCACGGCTGAGCCGCCGGCACTCCTCCGTGGCGCACAAGCAAGCTCTACACCAGC
TGATTACTTCTTTAGATTCCATTAGTTTCAAGGAAGCACTCGCGGCGGCGGCGGCTTCCTCATCGTGTCCCGTCACCATGCCGGTT
ACCACGGGGGCTACCATGCTAAGCAACCACCACCACCGTCTTCCGCCGTGGCTTGATGTCGGAGACAAAGATCTCCAACTACAACA
GAGTTCCCTTCAGTATGCTTTATCACCTTCTTCGGCTCCAAGTCACCTGAATGGTCAGCTACCGCCGCCGAGCTTTTTCAGCGATG
AGTTCACACCACGCGGCGGCCGTTTAAGCGATTTCACGGTGGCTGCAAGTGCGGCAGCGGAAGCTAGGGATAAGAATAGCTTTGAG
GTGGGTCATAGTGGCGATATTGATCTTGGATGGGTGAACGATCTCTTGACATGAGAATGTGATCATAATCAGAGACATTTTTCCGA
CGGTGAGGAAAGCACGGCGGCGGAGTTCCGTCGTGAGCCATTGTTAATTGAAAATTGTTAATTTTTCGTGCTTTTTATTTTTTTCT
CTTTTTTTTGGTTTCTTTGTTATTTTAAAAAATAAGTCCATAAGTTATTGTGATAAAAAAGACTTCTATTCTGATATTGTAATCTT
GGAACTTGTAATTTCTTCTATATTGGGATCGAATTCCTATGTAATGTTTACTTCAAAATATTCTCTTTACTAAAGAAAGAAGACCT
GTGTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_199239 zinc finger CCCH domain-containing protein 61 [Arabidopsis thaliana]15175e-166
XP_002863601 zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]14907e-163
XP_002889476 zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]9971e-105
BAC41895 unknown protein [Arabidopsis thaliana]9853e-104
NP_171875 zinc finger CCCH domain-containing protein 2 [Arabidopsis thaliana]9853e-104

Swiss-Prot top hits (Blast detail)Scoree value
Q9FKW2 Zinc finger CCCH domain-containing protein 6115172e-167
Q9ZWA1 Zinc finger CCCH domain-containing protein 29851e-105
Q9FU27 Zinc finger CCCH domain-containing protein 25522e-055
Q6L4N4 Zinc finger CCCH domain-containing protein 355512e-055
O82307 Zinc finger CCCH domain-containing protein 235101e-050

TrEMBL top hits (Blast detail)Scoree value
B9MYF5 Predicted protein7012e-071
Q5D6A7 Putative CCCH-type zinc finger transcription factor6634e-067
B9HGP6 Predicted protein6421e-064
B9RVV6 Putative uncharacterized protein5802e-057
A2WLL6 Putative uncharacterized protein5523e-054

Arabidopsis top hits (Blast detail)Scoree value
AT5G44260.1 zinc finger (CCCH-type) family protein15181e-168
AT1G03790.1 SOM (SOMNUS); nucleic acid binding / transcription factor9893e-107
AT2G25900.1 ATCTH; transcription factor5101e-051
AT2G19810.1 zinc finger (CCCH-type) family protein5063e-051
AT4G29190.1 zinc finger (CCCH-type) family protein5002e-050

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
195  71%
 
212  29%

Unigene MembersMember information