RadishBase

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Information for unigene UN26665

FASTA Sequence

Unigene ID: UN26665	Length: 1390	SSR
AGACACCTTGTAGAAAGACTTGCCAGAGTCAATCCGACAGAGCTAAGCCACAACGAGAAGCTCGCTTTCTGGATCAACATATACAA TGCCTTGATCATGCATGCATACTTGGCTTACGGCGTACCGAAAACCGACTTAAAGTTCTTCTCACTGATGCAAAAGGCTGCTTATA CAGTTGGCGGGCATTCATACAACGCAGCAACGATAGAATACATGACTCTACAGATGAACCCTCCTCTGCATCGACCTCAGATAGCT CTACTTCTCTCCATTCTCAAGCTGAAAGTATCAGAAGAGCAGGAACAGGCAGGGATAAGTAAACATGAACCTCTAGTGTCTTTCGC TCTCAGCTGCGGAATGCACTCATCGCCAGCGGTGAGGATATACTCAGCGGAGAACGTAGGAGAGGAACTTGAAGACGCTCAGAAAG ATTATATCCAGGCGTCAGTAGGAGTGAGCCCCAGGGGGAAGTTGATTGTACCCAAGATGCTTCACTGTTTCGGCAAGAACTTTGTC GACGACAGCAAGGTTGCTCTGTGGATCTCACGGCACTTGCCACCTCGCCAGGCCGCATTTGTTGAGCAGTGTATTCGCCGGAGACA ACGTTGGGGGTTTCTGGATTCATCTAGTAGCAAATGCGGTGTGATTCCTTTTGATTCACGGTTCCGGTATCTGTTTCTTCCCTAAT GATGGAAGCACACACACACACATTGTGTTCCGTTGCTCGGGGTTTAGGGCCTATGGCTATTTAGGTGATTCTAATAAACTAATCAA TGAATTAAGAATTGCTAAAAAAGAAATAAGAAAGACGAAATGTTTTCAAGATTGCAAAAAAAAAAATTTAATAGTAATCACCGGGG CGGCCGGCATACATTGTATTCAGACAAATAACAAAATGGTATTATTGTGTTCTGTTTGAAAGAGAATAAAGAAGGTAGAGATGAAA CTAACTTGGTGTCCTAATAAACTAGGCATTGATAGATGAAATGTCCACTTTCCGAGGCGCTTGGACCACGTTCCAGTTTCCAGGGA AGGACTTGCGGGAGACGTCCACGAGTGCTTTGAAGCTGTAAGGCTCATGCATAGAGAGCTCAGAGAGGACTTTACGGTTAAGCTGG ATGTTCTCCTTCATCAGTCCGTGGATAAAGTTACCGTAGTTCACTCCGTGCTGACGAGAGCCGGCGTTGGTACGCTCGATCCAGAG ACCTCTCATCTCACGTTTTTTGTTGCGCCTGTCTCTGTAAGAGTACTGAAGAGCTTTCTCCACTCTCTCCCTCGCGATTCTTATGC AGTTCTTCGCTCTTCCCCTGAATCCTTTGGCTAGCTTGAAGATCTCCTTCTTGTTCATATTTCTCTCTACTCCTCTTCTTCCTGTT CTCCTTCCTCCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM67295 unknown [Arabidopsis thaliana]	1090	2e-116
XP_002892919 hypothetical protein ARALYDRAFT_471871 [Arabidopsis lyrata subsp. lyrata]	1084	8e-116
AAG09084 Unknown Protein [Arabidopsis thaliana]	1082	1e-115
NP_564005 uncharacterized protein [Arabidopsis thaliana]	1082	1e-115
BAJ33667 unnamed protein product [Thellungiella halophila]	865	2e-090

Swiss-Prot top hits (Blast detail)	Score	e value
B6IPJ8 50S ribosomal protein L20	357	7e-033
Q3YSX0 50S ribosomal protein L20	344	2e-031
Q11KK1 50S ribosomal protein L20	334	3e-030
Q2GHR2 50S ribosomal protein L20	333	4e-030
B3CLK2 50S ribosomal protein L20	333	4e-030

TrEMBL top hits (Blast detail)	Score	e value
Q8LFD4 Putative uncharacterized protein	1090	1e-116
Q8L7U6 At1g16750/F19K19_26	1082	9e-116
Q9FWQ9 F17F16.4 protein	1082	9e-116
Q56W79 AT3G13000 protein	862	3e-090
Q9LSH9 At3g13000	862	3e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT1G16750.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G13000.2); Has 420 Blast hits to 403 proteins in 70 species: Archae - 0; Bacteria - 56; Metazoa - 34; Fungi - 2; Plants - 297; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).	1083	4e-118
AT3G13000.2 transcription factor	862	2e-092
AT3G13000.1 transcription factor	862	2e-092
AT1G16740.1 ribosomal protein L20 family protein	628	2e-065
AT4G37080.2 unknown protein	421	2e-041

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			13%


10	5			63%


6	2			25%

Unigene Members	Member information