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Information for unigene UN26668
| FASTA Sequence |
| Unigene ID: UN26668 | Length: 1245 |
SSR | | GGATGGCCATGGCTTATGCTATGGACTTATCTCCTCCAACCTTCTTCTTATCCCCAACCCCTTCTTCTTCTTCTTCTTCCTCTTCA
TCTTCTCTCCGACGTCTCTCTTCCCTTCCCGTCTCTACCTTTTCTCGCCACTCTAACCGGAGGCTACAGATGCTTTGCCAGGCCAC
AGCCGGAACTCAGCCTCAGAGTCAGAGCAACCTCTCTGACGCAAACTCCAAACTAGCCGCCCGTTCTGGCCAAGACCGTCTTTTGA
AGGTACCGATATCGAAGATAAGGAACTTTAGTATAATAGCACATATTGATCATGGGAAGTCGACTTTGGCGGATAAGTTGCTTCAG
GTGACTGGTACTTTTCAGAACAGAGATATGAAGGAGCAGTTTCTTGATAACATGGATTTAGAACGTGAACGAGGCATGACCATTAA
GCTTCAGGCAGCTCGAATGCGTTATGTTTATGAGGATACACCGTATTGTCTCAACTTGATTGATACTCCAGGCCATGTTGATTTCT
CTTACGAGGTTTCTCGATCTCTTGCCGCATGTGAGGGTGCTCTTCTTGTTGTGGATGCATCCCAGGGTGTGGAAGCGCAAACACTG
GCCAACGTTTATTTGGCTCTAGAAAACAACCTCGAAATCATTCCTGTTGTGAATAAGATTGACCTTCCAGGCGCTGAGCCAGAGCA
AGTTCTCAGGGAGATTGAGGAGGTTATTGGGTTAGACTGTAGCAAAGCAATACTCTGCTCGGCAAAGGAGGGAATTGGTATAACGG
AGATATTGAATGCAATTGTTGAAAGGATACCTCCACCTCCCGAAACTGCAGAAAAACCCTTCAGAGCCTTAATTTTTGACAGTTAT
TATGATCCATATCGTGGTGTCATTGTATACTTTCGAGTTATCGACGGGAAAGTGAAGAAAGGCGACAGGATCTATTCATGGCAAGC
GGAAAGGACTATTTCGCAGATGAAATAGGCGTTCTATCTCCAAATCAAATTCAAGTGGATGAGTTATATGCTGGTGAGGTGGGATA
CATTTCTGCTTCTATAAGATCAGTTGCAGATGCCAGGGTAGGAGATACAATAACAAATTTTAGCAGAAAGGCAGAAAGCTCCTTAC
CCGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGCCTGTTCCCAGTTGACGCTGACAGTTTCCTGATCTTCGAGATGCGTTGG
AAAACTGCACTCATGATGCCGCTTTGAAGTTGAGCTGAGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196482 GTP-binding protein LepA [Arabidopsis thaliana] | 1318 | 5e-143 |
| XP_002873375 hypothetical protein ARALYDRAFT_487706 [Arabidopsis lyrata subsp. lyrata] | 1317 | 7e-143 |
| AAM12957 GTP-binding protein LepA homolog [Arabidopsis thaliana] | 1316 | 9e-143 |
| BAB10014 GTP-binding protein LepA homolog [Arabidopsis thaliana] | 1297 | 1e-140 |
| A5B4D2 RecName: Full=Translation factor GUF1 homolog, chloroplastic; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor | 1111 | 5e-119 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9PKX6 GTP-binding protein lepA | 794 | 1e-083 |
| B0B9H2 GTP-binding protein lepA | 788 | 6e-083 |
| Q3KMV7 GTP-binding protein lepA | 788 | 6e-083 |
| B0BB51 GTP-binding protein lepA | 788 | 6e-083 |
| O84067 GTP-binding protein lepA | 788 | 6e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RWP3 GTP-binding protein LepA homolog | 1316 | 6e-143 |
| Q9FNM5 GTP-binding protein LepA homolog | 1297 | 9e-141 |
| A5B4D2 Putative uncharacterized protein | 1111 | 3e-119 |
| B9RHQ5 GTP-binding protein lepa, putative | 1100 | 7e-118 |
| B9GHA6 Predicted protein | 1066 | 6e-114 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08650.1 GTP-binding protein LepA, putative | 1322 | 7e-146 |
| AT5G39900.1 GTP binding / GTPase/ translation elongation factor | 705 | 2e-074 |
| AT5G13650.1 elongation factor family protein | 287 | 7e-026 |
| AT5G13650.2 elongation factor family protein | 287 | 7e-026 |
| AT2G31060.2 elongation factor family protein | 262 | 5e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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