RadishBase

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Information for unigene UN26733

FASTA Sequence

Unigene ID: UN26733	Length: 1032	SSR
GTGCTAAGTTGCAGTCACTTCCAAAAGAGAGGAAGATTGATGACAATGTTGCTGTGAACCTCACTTTTACAGGAAGCCCTGTCTTG GATGATTCTTCTGTTGAAGTTGGAATCAATGGTTTGTTGTTCATGCCAAATGGTGAAGTTTCAGGATCTCAGTCTTCTTCTTCTTC TTCCTCTTTTCCCAAGGTTAAAAGAATGATGGGAATTGCAATTAAAGAAGAAGTTTTCAACTCTGCAACACTTGTCTACTTCATTG CAAAGAAGATGCATGTGGATATCGATCAAACGAAGAACGGGTCGGCTCTAAAAACATCTGACTGGAAACTCATACTTCCAGAGCTC TACAAACAATATCCAAATGTTAAAATGATGCTTAACATGTCGGTTACATCTCCTCCTGCTGTCAACATCAGAGAGACTGGCATTGA TGCAATCATTGACTTAGAGATATCAATCGATGTCCAAAACTCTGGGGTAGTCCTATCCGTGGCACGCATGTCAACGGTTCTGGAAG TTGCGGGTACTGCAGAGATAGCAGAGAACAATTTAGCAGGTAGCCTAAGAATAAAAGGTTTCAATGCAACAATGACTTGGAGTAAA CTTGGAGATCTTCAAGCAAACTATATTCAGGATGTAGCGTCGACGATTCTTGAATCCTTGTTTTTGCCGTACGTAAACGCACGTCT CAAAAAAGGTTTCCCTTTGCCGTTTACGCACGGTTTCAAGATCAAAAACACAGAGATAGTCTATGTTGAAAATGGCATTATGGTGT GCAGTGATGTAGCCTTTGGTTAGGTTAATGAACAGCCTCTCACGATTAGTGATACTTGTGAATCTGTTGCTATTTCTGTATAAAGC TGCGTTGTAAATTTGTTAAGACTTGAAAGTATCATCATGTATATATCTATCTCTCAGGTACTAGTTTGAATTACCTATGTTGTTAC ACACATGTTAGAACAACATTTATACAGCTTGTAGATAATTTATATAGTTTATACTGTTTGTGTATAATAACATTTACATTGATCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_851006 lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]	842	6e-088
NP_188662 lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]	842	6e-088
XP_002883239 lipid-binding serum glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]	839	1e-087
BAB02808 unnamed protein product [Arabidopsis thaliana]	608	8e-061
XP_002272020 PREDICTED: hypothetical protein [Vitis vinifera]	548	7e-054

Swiss-Prot top hits (Blast detail)	Score	e value
Q8VYC2 Putative BPI/LBP family protein At3g20270	842	3e-089
P17213 Bactericidal permeability-increasing protein	228	4e-018
Q6AXU0 Bactericidal permeability-increasing protein	196	2e-014
P17453 Bactericidal permeability-increasing protein	188	2e-013
Q63313 Lipopolysaccharide-binding protein	179	2e-012

TrEMBL top hits (Blast detail)	Score	e value
Q3EB36 Putative uncharacterized protein At3g20270.1	842	4e-088
B9IAM2 Predicted protein	526	2e-051
Q3E6Y7 Putative uncharacterized protein At1g04970.2	525	2e-051
Q9MAU5 F13M7.4 protein	525	2e-051
Q8LAL8 Putative uncharacterized protein	522	5e-051

Arabidopsis top hits (Blast detail)	Score	e value
AT3G20270.1 lipid-binding serum glycoprotein family protein	842	2e-090
AT3G20270.2 lipid-binding serum glycoprotein family protein	842	2e-090
AT1G04970.1 lipid-binding serum glycoprotein family protein	529	5e-054
AT1G04970.2 lipid-binding serum glycoprotein family protein	529	5e-054

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			25%


9	3			75%

Unigene Members	Member information