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Information for unigene UN26791
| FASTA Sequence |
| Unigene ID: UN26791 | Length: 1726 |
SSR | | GGCTCCACTCGACAGTCAACTAGGGTTTACCGGAAACCTCAGAGAGACACGACGACGCTCTCTCTCTCTACTCTCGCTGCTTACTG
ATCCGAAGGTGAAATAGCGCTGCGACATCTGAGCCGGCCGAGAGACATCGTAAAGAGATCGACGAAGAAGTACCTCGACGAACCCC
TTTACCATCGTCTCTTCAAGGACGGCGGATCCGAGGTCAATGTTCGTCAGCAGCTCAATCAGTTCCTCAAGGGCACTAAACACGTC
TTCAAATGGGAAGTCGGAGATACGATCAAGAAGCTCCGTAGCCGCGGCCTCTATTACCCCGCTCTCAAGCTCTCTGAAGTAATGGA
ACATAGAGGTATGAACAAGACGGTGAGTGACCAAGCAATCCATCTCGATCTCGTTGCCAAAGCTCGTGGAATCACAGCGGGAGAGG
CTTACTTTGTCGCTCTTCCGGAGACATCTAAAACCGAGCTCACCTACGCCTCTCTTCTCAACTGCTACTGCAAGGAGCTGATGACT
GAGAAAGCGGAAGGTTTATTGAGCAAGATGAAGGAGCTCAACATCACCGTTAGCTCCATGTCCTACAACAGCCTCATGACTCTTTA
CACAAAGACGGGACAGGCCGAGAGGGTTCCGGGGGTGATTCAGGAGATGAAGGCAGAGAACGTCATGCCGGATTCCTACACGTACA
ATGTCTGGATGAGGGCGTTGGCTGCTGCCGAGGATGTCTCTGGTGTTGAGAGAGTTATTGAAGAGATGAACAGAGATGGTAGAGTT
GCTCCGGATTGGACTACGTATAGTAACATGGCGTCTATTTACGTTGATGCGGGACTCTCTGAGAAAGCTGAGAAGGCACTTCAGGA
GCTGGAGGTGAAGAACACTGACAGGGATTTCAAGGCGTATCAGTTTCTTGTTACATTGTATGGACGGCTTGGGAAACTGACTGAGG
TTTATAGGATCTGGCGTTCGTTGAGGCTGGCTATGCCGAAAACTTCGAATGTGGCGTATCTGAACATGATACAAGTGCTGGTGAAC
TTGAAAGATGTACCTGGTGCAGAGACACTGTTCAAGGAATGGCAAGCGAACTGTTCTACTTACGACATCCGGGTTGTAAATGTGAT
GATTGGAGCTTATGCCAGAGAAGGTCTCATCGAAAAAGCAAATGAGCTCAAGGAGAAATCTCCAAGAAGAGGTGGAAAGCTCAATG
CTAAAACATGGGAGCTCTTCATGGATTACTATGTAAAGAGCGGTGATACGGCTCAAGCACTTGAGTGTATGACTAAGGCAGCTTCT
ATCGGGAAAGGAGATGGTGGTAAGTGGCTACCGTCAGAGGAAACAGTCAGAAGTTTGATGAGCCAGTTCGAGGAAAAGAAAGATGT
TAAAGGAGCTGAGAGTTTGGTGGAGATTTTAAAGAAGGGAACGGATGATGTAGCCGCGGAGACGTTTGAATCATTGATAAGAACAT
ATGCAGCAGCTGGAAAGAGCCATCCTGCTATGCGCCAGCGCCTGAAGATGGAGAAGGTGAAGGTTGATAAAGCAACAGAGAAGCTG
CTCGATGAATTATGTCAGGAAGAGTGAGGTCTGTTCCATCTCTCATCTCCTTCATTTTTTTTTTTTTTTTTAATTTCCCTTCAAGC
AAGACATTGTTAGTCGTGTAAGAGCGAGCACTTGCATTCTCTCTGCTCTGTTTCTTACTGGTAATAAAAGAAAAAAATAGGCTATG
ACTGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886593 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 2234 | 5e-249 |
| NP_176276 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 2215 | 8e-247 |
| XP_002331159 predicted protein [Populus trichocarpa] | 1797 | 2e-198 |
| XP_002527905 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 1790 | 1e-197 |
| XP_002267979 PREDICTED: hypothetical protein [Vitis vinifera] | 1722 | 1e-189 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22714 Pentatricopeptide repeat-containing protein At1g60770 | 2215 | 3e-248 |
| Q9FZ24 Pentatricopeptide repeat-containing protein At1g02370, mitochondrial | 761 | 1e-079 |
| Q93WC5 Pentatricopeptide repeat-containing protein At4g01990, mitochondrial | 733 | 2e-076 |
| Q8LPS6 Pentatricopeptide repeat-containing protein At1g02150 | 661 | 5e-068 |
| Q84JR3 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial | 656 | 2e-067 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PHB6 Predicted protein | 1797 | 2e-198 |
| B9SPI6 Pentatricopeptide repeat-containing protein, putative | 1790 | 1e-197 |
| A2XFN0 Putative uncharacterized protein | 1128 | 6e-121 |
| Q01M49 H0107B07.5 protein | 1128 | 6e-121 |
| Q7XTG6 OSJNBa0041M06.2 protein | 1128 | 6e-121 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G60770.1 pentatricopeptide (PPR) repeat-containing protein | 2215 | 3e-249 |
| AT1G02370.1 pentatricopeptide (PPR) repeat-containing protein | 761 | 1e-080 |
| AT4G01990.1 pentatricopeptide (PPR) repeat-containing protein | 735 | 1e-077 |
| AT1G02150.1 pentatricopeptide (PPR) repeat-containing protein | 661 | 4e-069 |
| AT4G21705.1 pentatricopeptide (PPR) repeat-containing protein | 656 | 2e-068 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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