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Information for unigene UN26797

FASTA Sequence
Unigene ID: UN26797Length: 1882 SSR 
TGGACAACTCAGCTCCGGACTCTCTACCTAGATCCGAAACCGCCGTCACCTACGAATCTCCTTACCCCCTCTACGCCATGTCCTTC
TCCTCCTCCTCCTCCACCACCCACCGAATCGCCGTCGGAAGCTTCCTCGAAGACTACAACAACCGCATCGACATCCTCTCCTTCGA
TCCCGACTCCATGTCCGTCAAACCCCTCCCTTCCCTCTCCTTCGACCACCCCTACCCTCCCACCAAGCTCATGTTCAGCCCTCCCT
CCCTCCGCCGCGACCTCCTCGCCTCCTCCGGCGACTTCCTCCGCCTCTGGGAGATCACCGACTCCCCCTCCTCGGAGCCCCTCTCG
GTCCTCAACAACAGCAAGACGTCCGAGTTCTGCGCCCCGCTGACCTCCTTCGACTGGAACGACGTCGAGCCCAAACGCCTCGGCAC
GTGCAGCATCGACACCACGTGCACCATCTGGGACGTGGAGCGGTCCGTCGTTGAGACGCAGCTCATCGCGCACGACAAGGAGGTCC
ACGACATCGCCTGGGGGGAGGCCAGGGTCTTCGCCTCCGTCTCCGCCGACGGATCCGTGCGAATCTTCGACCTCCGCGACAAGGAG
CACTCCACCATCATCTACGAGAGCCCCCAGCCCGACACGCCGCTCCTGAGGCTCGCGTGGAACAAGCAGGATCTCAGGTACATGGC
GACGATCCTGATGGATTCGAACAAGGTTGTGATTCTCGACATTCGATCGCCCACGATGCCTGTCGCTGAGCTGGAGCGGCACCAGG
GGAGTGTTAACGCGATCGGGTGGGCCCCGCAGAGCTGTAAGCATATATGTTCTGGGGGTGATGACGCGCAGGCGCTTATTTGGGAG
TTGCCGACGGTTGCTGGACCGAATGGGATTGATCCGATGTCGGTTTACTCGGCCGGTTCGGAAATTAACCAGTTGCAGTGGTCTTC
TTCGTTGCCTGATTGGATTGGGATTGCTTTTGCTAATAAAATGCAGCTCCTTAGAGTTTGAGATGGAGATGGGAAGTGATCAGAAT
CGGAGTTAAGCATAGACCCGCGTAACCAGTAAGATGCGTAAGCTTTAGTAGGGTTTGGTTGGTGCATGCACATTCTGGTTTCTTTT
CATCCGCAATGCCCTCTCTGTATCCATCCATCTGGTTGTAACTAAGACTTGATTCATTTGGTGTACCAAATGCTCTGCTATTTTAT
CTCTGTTTGTGTATAAACCCAACCAGGATAATAATATTATTGCGGTGGTTTCTGGTGTTTAGATTTGTCATAGGAGTACTTGTCAT
GGGTTGGTTAGCATCTAAACAAAAGCAATTGTGTAAGATAAGTTTACAGGTTCCAACTTTAGACACATGAAAATTAACTTCAAATG
AAAACCAAAAGTTCCAAACCTCGAGGTTAGCTTGACGGAAGCGAGAGGACCGTCCCACGACTTTTTTACTGCCAAGGAGCTTTTCC
GACCCGTTTTTCCTGATCCTGGTCTTACCCGCATCCGATCATTATAGGAGTTACCACAGAGGAAACCTGAACGGAGTGTCTTTGAA
TCAATCCAGCTCCCCACCATTGAGACCACCGTGGCAGGAGATGAGCACGGTGGCAAAGATAACGAGAGGCTGCAGTGTTGAAACTT
GGTTTGAGAAAACCCTAAGAGTGTCGCTATTTTGGTTTGAGAGAGAGATTAACAGATTCTTTTGTTTTTCGAGTGAAGACTGTCGG
AAAAGTTTTTTTTTCGATAAGGTGAAAAATGGGATAAGGACGCTGACATATGCAAACGAATTGTATTTATGAAGTTAACCCTTTTT
CTTTTCCCATATTTACACATTGTTCCCCTCCTAGTAATCAGTAATCACGATCCTGTTTTTGGGTTTGACAAAACGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABP04011 transparent testa glabra 1 isoform 1 [Brassica napus]16361e-179
ADP38078 WD40 transcription regulator [Brassica oleracea var. botrytis]16361e-179
ABP04014 transparent testa glabra 1 isoform 2 [Brassica napus]16333e-179
ADK11704 transparent testa glabra 1 [Brassica rapa subsp. rapa]16333e-179
ABY59775 WD-repeat regulatory factor [Brassica napus]16298e-179

Swiss-Prot top hits (Blast detail)Scoree value
Q9XGN1 Protein TRANSPARENT TESTA GLABRA 116151e-178
Q9LPV9 WD repeat-containing protein LWD110891e-117
Q38960 WD repeat-containing protein LWD210721e-115
Q552R1 DDB1- and CUL4-associated factor 7 homolog8911e-094
P61962 DDB1- and CUL4-associated factor 75057e-050

TrEMBL top hits (Blast detail)Scoree value
A5HB99 WD-like protein16368e-180
A9XCN4 Transparent testa glabra 1 isoform 116368e-180
A9XCN7 Transparent testa glabra 1 isoform 216332e-179
B6RFA4 WD-repeat regulatory factor16295e-179
B6RFA5 WD-repeat regulatory factor16162e-177

Arabidopsis top hits (Blast detail)Scoree value
AT5G24520.1 TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding16222e-180
AT5G24520.3 TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding16222e-180
AT5G24520.2 TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding16222e-180
AT1G12910.1 ATAN11 (ANTHOCYANIN11); nucleotide binding10909e-119
AT3G26640.1 LWD2 (LIGHT-REGULATED WD 2); nucleotide binding10738e-117

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  40%
 
122  40%
 
101  20%

Unigene MembersMember information