RadishBase

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Information for unigene UN26833

FASTA Sequence

Unigene ID: UN26833	Length: 1429	SSR
GGCTTTCTAACCAAATGACACTTTTTGAGTTTTTCTTTTGTGATCAAAAACACAACAAGACATTACATAAAGTTTTAATTACAGTT GTGCACTCGCTGTGAGTTTTCTTCGTGTTTCCAAACTCTTAGGTTTAGTAGTCTCCATTGGGAACCTCGGAACATAACTTGGGGAT GTCTTGTTTTTGTTCATGCTACGTCTTCTCTCTGAATCACCAGAAACCATAACAGATTTATAACTCTTACAGCTCAACAAGAAACC ACCACTTCTGCTGCTGCTGCTATTCGTTTTCCGAATCTGCTGTGCATTTTTAGACATTTTATGAATCTTGTTATTACTAGGGACCC TAGGAACATGAGAAGAGCGGTTTCTTCTTACAGGGCTTGTTGCACATTCTGACATAACAGAAAAACCTGCTGCACTTTCCGTCACT ACGCTCCACTCTATGCTTACTTCGCTCGGAGCATAATCACTTACTTGCCTTGAAAGAAAAGGTTTTGGTTTACCTGTGAGATTGTC TATCTCGAACAGATCCGAGCTTGAATCACTCCCTTCACTCTTTGTGTCTTCTTCCTTTCTTCTTGATTCCCACGGAGACAATGTGA GTTTCTTCTCGATATTTACAGGAGATCCAAACACTTCAGGACCCTTCCTTTGTACTACTAACTCTTCTTGCTTCTGAATCTTGATC AGTTCCGTGTTCAGACTCACTGAAGAACTCATCTGATTCTCGATCTTGATCCTAGCGGAAGCAGAGATATTCGGATCAGAGCTTCT CTTAACCGAGATCTTATCATCCACATCAGAGCAGCATTTACACCTAAGGTTTGAGAGAAAGCTCTTCTTATTGTTGTTGTTCACCT TTTGAATCTGACCATTATTGTTCTTCTTCTTCTCTTGCAAGGAATCGTTGCAGCTACTCACCAGTTTGTTCTTAAGCAACATACTC TGACTGTTCCAGCTTGATTCAGTACAGACACTCGGCGTTCCATTAGATTTCTTCTCACTCTGTTTCAGATCAACAACGAATCTCTC AACTTCGGGTTTTGTCAGAGACAGAACACTAGAACTCTGGTCTGAATCCATGTCTCCATTGAAGTACCTCTCAGCTCCAAACACAC CAATCTCTGGCTCTTCAGGAGCTTTCTTCACCATTTTCTTCTCATCTCCAAGCTCATGAGCATCTTTAGGATTGTTGTTCATGGTT AGGGTTTTGCAGGGTTCCATGGGGTTCTTGGTTGTGACAACAGCTTCTTCCTTGCTTCCCAAGTAAGAAGAAGAAGAAGGAGAAGA GACCGGAACGTTAAGGCTAGGATAATTGTTTTCTTTGGTGAAATCAAAAGATATCTTTGGTGTTGAAGCAGATGATGATATTAAGG TCACCATATTTTTTTTAGGGTTGCTTTGATTTCTTCTTACTTTTCTCTTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002876852 phytochrome kinase substrate 1 [Arabidopsis lyrata subsp. lyrata]	1459	3e-159
AAD38033 phytochrome kinase substrate 1 [Arabidopsis thaliana]	1383	2e-150
NP_565292 phytochrome kinase substrate 1 [Arabidopsis thaliana]	1379	5e-150
ABP96542 phytochrome kinase substrate 1 [Arabidopsis thaliana]	931	5e-098
ABP96547 phytochrome kinase substrate 1 [Arabidopsis thaliana]	926	2e-097

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SWI1 Protein PHYTOCHROME KINASE SUBSTRATE 1	1379	2e-151
Q9M9T4 Protein PHYTOCHROME KINASE SUBSTRATE 2	801	2e-084

TrEMBL top hits (Blast detail)	Score	e value
A5Y7K9 Phytochrome kinase substrate 1 (Fragment)	931	3e-098
A5Y7L4 Phytochrome kinase substrate 1 (Fragment)	926	1e-097
A5Y7K2 Phytochrome kinase substrate 1 (Fragment)	924	2e-097
A5Y7K7 Phytochrome kinase substrate 1 (Fragment)	920	6e-097
A5Y7K1 Phytochrome kinase substrate 1 (Fragment)	914	3e-096

Arabidopsis top hits (Blast detail)	Score	e value
AT2G02950.1 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding	1379	2e-152
AT1G14280.1 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)	801	2e-085
AT1G18810.1 phytochrome kinase substrate-related	201	8e-016

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			67%


10	1			33%

Unigene Members	Member information