RadishBase

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Information for unigene UN26876

FASTA Sequence

Unigene ID: UN26876	Length: 1160	SSR
CGAGCAACTTTTTTTATCTTGAACTCATCATCAAAATCACATACAAATATGATCATCTTTCTCCATAATTAACTTTTCAAAAGATT GAAGAGGGGACTCTATTTCATGGATTCTTCTCATGAGAAAAAGACTTGAACGCTAGAAGTTTTCAAAGACTGACAAACAGGACAAA CACCAGTGAACGCATCACAGTCTTTACACAAACTCAAGTGCCTACACGGTACGAGCAACACAGAAACCTCCTTTACCTTACACGAC TTGCATCTCATCCCAGTGTTTGGTACCCGCGGGATGTTCATGTGGTTGTATGAAGCTGCTCCATCATCAATCTCGCTATCCCCGAA CCCTTCTTTCACTTGGTGCTGATGATGATGATGATCAGCTAATACACCACTTGCATTGATGTTGTTTCCATGTGACATCATCACTT GTTGCAGATTTACCTTTAAGGCATTAACCACAGATTCATTGTACTTTGCCCTGTAATGCCAGTTCTGAGATTCCACCGCCACTTGT TTTATCTTCTCCACGAGTTCCCGGTTCTTCTTGTTCATGTTTTTGATCTCCTCGTCTTTCTCTTGCAGCTTCTTGCTCACCTCCTT CTCTAAGGCCGTGACAAAAGACGTGATATGTCTCTGTTTTATATCTCTCACACCCTTCGCCAGTTGGTCCCCCTGGAATTTGATAA ACTGATCAAGCTCTTCTTTTTGTCTATCAAAGTCCAATCTGATACCGTCACCGAGTGACTGAAACATTGGAGTTGTGATGTTTCCA TTTGCAGAAGTTACAGAAGAGTTTCGCTCATCGTCGTCATAAGATAGTCTCAGACCAGTTGACACTAAGTTATGCTTTGTGACTTC ATTTTGAACACCACTATTGTTCTTGTTGTTGTAGTTATAGTCCAAAGAGATCTGCTGTCTCTGTATGCTATTGATGATCTCGGTAT CCCTAGCGCGTTTGTTAATATTCGGAATCATTGGAGCACGGCTATCATTAGCAAAGTAGTTAACAGGATCAATAGTGCAACCAGCG TTCATGGTTCCAAGCAAGTGAGGCTGATTCAGGGAAGTGTTTGATTGGTAGTGAAACTGGCTACCCTGCGGTAAGGGGTTGATGTC ATTGTTGCCTCCTCCCAACATCTTCTCAATTGCTTAACCGTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002886605 protein binding protein [Arabidopsis lyrata subsp. lyrata]	1356	2e-147
NP_176260 putative S-ribonuclease binding protein SBP1 [Arabidopsis thaliana]	1329	2e-144
AAB71973 Unknown protein [Arabidopsis thaliana]	1306	1e-141
NP_172535 putative S-ribonuclease binding protein SBP1 [Arabidopsis thaliana]	969	1e-102
BAD95238 At1g10650 [Arabidopsis thaliana]	963	7e-102

Swiss-Prot top hits (Blast detail)	Score	e value
Q13489 Baculoviral IAP repeat-containing protein 3	130	1e-006
O62640 Putative inhibitor of apoptosis	126	3e-006
A1E2V0 Baculoviral IAP repeat-containing protein 3	124	6e-006
O08863 Baculoviral IAP repeat-containing protein 3	123	7e-006
Q13490 Baculoviral IAP repeat-containing protein 2	122	9e-006

TrEMBL top hits (Blast detail)	Score	e value
Q4TU35 At1g60610	1329	2e-144
O22700 F8A5.13 protein	1306	8e-142
Q84JF9 Putative S-ribonuclease binding protein SBP1	969	9e-103
Q56W92 At1g10650 protein	963	5e-102
B3H4E5 Uncharacterized protein At1g10650.2	829	2e-086

Arabidopsis top hits (Blast detail)	Score	e value
AT1G60610.1 protein binding / zinc ion binding	1329	9e-147
AT1G60610.2 protein binding / zinc ion binding	1329	9e-147
AT1G60610.3 protein binding / zinc ion binding	1329	9e-147
AT1G10650.1 protein binding / zinc ion binding	1053	9e-115
AT1G10650.2 protein binding / zinc ion binding	913	2e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			60%


10	2			40%

Unigene Members	Member information