RadishBase

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Information for unigene UN26888

FASTA Sequence

Unigene ID: UN26888	Length: 1268	SSR
GGGGGGTTAAAAACCTATAAAAGAATCAAAACAAACTTTCCAAAATCTCAGCTCATCCGATCTGCTGCCTCCTGCCTTTTGACTCC TCCTTGATAAGAAGAAGAAGAAGAAGAAGAGGAATCCAAAACTTCTCCGATCTTCTTCAAACACCAAAAATAATCCCTAAAAATCA GATCGTTTGCTTTTTTATATTGATTTGTGGTGGGCAATGGAGTTTAATGGAGATGATGAGTCTAGCTTCGAGCAGTGTTACCGTTG TTACCCTGTCACATTCATTGAAAAGGCACATCTTGACAAGGGGGACAAAATTATAATGCCTCCTTCCGCTCTCAACCGTCTTGCTT CTTTGCATATTGAGTACCCAATGTTGTTTCAACTGAGTAATGAATCTGTTGGCAAGATCACACATTGTGGTGTACTCGAGTTCACC GCAGACGAAGGCCTTGTTTACTTTCCCTATTGGATGATGCAAAACATGTCTCTTCAAGAAGGAGACATTGTGAGAATCAAGAATAT GAGTTTGGTGAAAGGGACTTACATCAAGCTTCAGCCTCACACTCAAGATTTCTTGGACATTACCAACCCAAAAGCCATCTTGGAGA CTACGCTTAGGAGCTACTCTTGCTTGACCACTGGCGACACAATCATGGTTCCTTACAACAACAAGCAGTATTTTATCAATGTGGTT GAAGCGAAGCCGTCGTCAGCTGTGAGTATCATAGAAACGGACTGCGAGGTTGATTTCGCTCCTCCTCTTGATTACAAAGAACCTGA GAAGCCGCAGAAGCTGACTCCTCTAAAGAAGCGAACTCGCCAAGTTGAGGAAGAGGAACCAGCAATCAAAGTTCCCAAGTTCACGC CATTCACTGGGTCCGGAAAGCGTTTGGATGGGAAGACACAAACAGAATCAACTGAACAAGAAGAGAAGCCAACTAAGGGAGAGGAT GAAGAGAAGCTGTCAAGCATAACGCCACCGCAAAAATCAGGGAAGCTTGTCTTTGGCTCAAACAGCAAACAAACTTCAAAAGCAAA TGTGAAAGTTGATCCAAAGAACGTGGAGCAAGAAAGTTCGACTAAATTTGATGAAGCTAAGTTTAAAGTGTTTACTGGGAAGAAAT ACTCACTCAAGGGTTAAGAAAAAAACATAGGTTTTTTTTTAAAGTTCAATCATCTGCTGATGAATATTTATTAGTTTTTTTTCTTC CTTTTCACAACATTTATTTGTTAAGCATTTTTTATATTCATATATTATCGAACCAATTTATGGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_973557 ubiquitin fusion degradation UFD1-like protein [Arabidopsis thaliana]	1319	4e-143
XP_002879200 predicted protein [Arabidopsis lyrata subsp. lyrata]	1288	2e-139
AAC33233 putative ubiquitin fusion-degradation protein [Arabidopsis thaliana]	1180	5e-127
NP_180471 ubiquitin fusion degradation UFD1-like protein [Arabidopsis thaliana]	1173	3e-126
XP_002299862 predicted protein [Populus trichocarpa]	1043	4e-111

Swiss-Prot top hits (Blast detail)	Score	e value
Q55BK0 Ubiquitin fusion degradation protein 1 homolog	615	7e-063
Q9ES53 Ubiquitin fusion degradation protein 1 homolog	591	4e-060
Q92890 Ubiquitin fusion degradation protein 1 homolog	587	1e-059
P70362 Ubiquitin fusion degradation protein 1 homolog	585	2e-059
Q9VTF9 Ubiquitin fusion degradation protein 1 homolog	535	1e-053

TrEMBL top hits (Blast detail)	Score	e value
Q6NLS0 At2g29070	1319	3e-143
O81075 Putative ubiquitin fusion-degradation protein	1180	4e-127
Q3E7H7 Putative uncharacterized protein At2g29070.1	1173	2e-126
B9GJA6 Predicted protein (Fragment)	1043	3e-111
A9PDL8 Putative uncharacterized protein	1037	1e-110

Arabidopsis top hits (Blast detail)	Score	e value
AT2G29070.2 ubiquitin fusion degradation UFD1 family protein	1320	1e-145
AT2G29070.1 ubiquitin fusion degradation UFD1 family protein	1174	1e-128
AT4G38930.1 ubiquitin fusion degradation UFD1 family protein	940	1e-101
AT2G21270.1 ubiquitin fusion degradation UFD1 family protein	939	2e-101
AT2G21270.2 ubiquitin fusion degradation UFD1 family protein	939	2e-101

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information