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Information for unigene UN26972

FASTA Sequence
Unigene ID: UN26972Length: 887 SSR 
GACTGACTTTGAGCTCGAGAGGCATCCTCCACCGCCTCCTACGTTGAAGAACAGCTCTAAGAAGCTGCTTAATGGCTCTGGACTCA
ATCTCTCGACTCAACCGTCGAATGGTGAAGCGAACGATCTGTCTCCCTCTAGCCAACACAAGAAGAGGAAGGACATGTTCTTTAAC
GGGATCCACGAAGAAGAGTGTTGCTTAACCGTGAACCCGCCTGCTGTTGTAGAAGTCCACCAGAACGAGCCACCGAACTGGTCTAA
TGAGTTCAGCGGAGCCATGAAGAACGTGCACGGGCCTGTTACAGCTGCGAAGACCATATACGAGGACGAGGAAGGCTACTTGATCA
TAATCACACTTCCTTTCGTGGACCTGAACAGCGTGAAAGTCTCGTGGAGGAACACTCTCACGCACGGTATCATAAAAGTCTCGTGC
GTCAGCACGTCGCGCGTGCCTTTCATCAAGAGACACGACAGGACGTTCAAGCTGACTGATCCGAACTCCGAGCATTGCCCACCGGG
GGAGTTTGTTAGAGAGGTCCCGTTATCGACACGTATCCCTGAGGATGCGAATATTGAGGCGTATTACGATGGACCGGGATCGGTTC
TTGAGATACTTGTCCCGAAACTGAGAGCTGGTCCGGAAGAGCATGAGGTGAGGGTGTGTTTACGTCCGCACCTGGGAGGAAACGAT
CTTATGTTGACATAAAAAAAGAGAGAGAGAGACGTTTTCTGTTACACAGTGTTCTCGTTATGTAGAAAGCTTTATAGGAGTCAGCA
TATGTCATTGATGTTTGCCATTTGATAATATATAGACGTTTTCACTGTTTTATATGAGATTATTCATCACATTGCAATCTTGTGTA
CGTTATGTTTGAATCAACCGTAGCCCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881516 sodium-and lithium-tolerant 1 [Arabidopsis lyrata subsp. lyrata]10371e-110
BAJ34598 unnamed protein product [Thellungiella halophila]10361e-110
NP_565864 protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana]10324e-110
NP_973625 protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana]10324e-110
XP_002263786 PREDICTED: hypothetical protein [Vitis vinifera]9034e-095

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O80926 Expressed protein10323e-110
Q3EBL0 Uncharacterized protein At2g37570.210323e-110
B9SP16 Putative uncharacterized protein8925e-094
Q9FQY3 SLT1 protein8146e-085
A5AGE0 Putative uncharacterized protein7601e-078

Arabidopsis top hits (Blast detail)Scoree value
AT2G37570.2 SLT1 (sodium- and lithium-tolerant 1)10501e-114
AT2G37570.1 SLT1 (sodium- and lithium-tolerant 1)10501e-114
AT5G02480.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 60 Blast hits to 60 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7151e-075
AT3G12570.1 FYD6244e-065
AT3G12570.3 FYD6244e-065

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  100%

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