 |
Information for unigene UN27013
| FASTA Sequence |
| Unigene ID: UN27013 | Length: 1564 |
SSR | | GGGCTCCCAACTCTGTCTTCTCTTTCTCTCTAACTCGATTTCACAAACCCAAACCCTAATTTCTCTTCTTCACCGGGGGGATTAGT
TCAAATCTAGGGTTCTCTGGGTACCAAATCAATGGAATCAGATCAGGGGAAGCTCTTCATCGGCGGGATTTCATGGGACACGGACG
AGAATCTCCTGAGAGAGTACTTCACCAACTACGGCGAGGTTTCTCAGGTCACAGTCATGCGAGAGAAAGCCACGAGCCGTCCCAGG
GGATTCGGATTCGTCTCCTTCTCCGATCCCGCCGTCATCGATAGGGTTCTTCAGACCAAACACCACATCGATAATAGAGATGTTGA
TGTGAAGAGGGCAATGTCTAGAGAAGAGCAGAGTCCTGGTGGTGGTAGTAGAGGAGGGAGTTTTAATGGTGCTTCTAGGAGTTTTG
ATAGTGGAGCTAACGTTCGTACCAAGAAGATATTCGTGGGAGGTTTGCCTCCTGCTTTGACGTCTGATGAGTTCAGGGCCTACTTC
GAGAGTTACGGCCCTGTGAGCGATGCGGTGATTATGATTGACCAGACCACGCAGCGGCCTAGAGGGTTTGGGTTTGTTTCGTTTGA
CTCTGAAGATTCGGTTGACCTTGTTTTGCACAAGACTTTCCATGATTTGAGTGGGAAGCAAGTAGAGGTTAAGAGAGCCCTTCCTA
AAGATGCTAATCCTGGAGTAGCCGGCGGTGGTGGTGGTGGTCGTGGTTTCCCGGGCTATGGTGAGGGTCGTGTTGATTCCAGTAGT
AGATACATGCCGTCTCAAAACGCTGGAGGAAGCGGTTATCCTCCTTATGGTGGTTCTGGGTATGGTGCTGGTTATGGTTATGGCAG
CAACGGTGTAGGTTATGGGGGTTTTGGAGGGTATGGGAATCCATCTGGTGCGCCTTATGGGAACCCTGGTGTGACTGTCCCTGGAG
CTGGGTTTGGAAGTGGTCCAAGAAGTTCGTGGGGAGGTCAAGCACCGTCTGGTTACGGTAACGTGGGATATGGAAATGCTGCTGCT
GCTCCGTGGGGTGGTTCTGGTCCCGGTTCAGCAGTGATGGGTCAAGGAGGTGCATCTGCAGGTTATGGCGGTCAAGGTTATGGATA
TGGTGGGAATGATTCCTCTTATGGGACTCCATCTGGTTATGGTGCAGTCGGTGGGCGGCCTAACAGCCTTGGCGGTGGCTATGCTG
ATGGTTTAGATGGCTATGGGAATCACCAAGGGAGCGGGCAAGCTGGTTATGGCGGTGGTTATGGAAGCGGGAATCAAGCTTTACAA
CAGTGATTGGAGGAAGAAAGACTACTACATTGTGGTCTTATCTTTGACCTTGAATATCCTCCTCTCTTGGATCCTTATGGATGCCG
CCCTTTGACCTGGATTATCTCTTTTGTTAGTTTCTTAATAAGTTGTTGGTCAGGCACTTCTTGATGCTGAGTCGTACTTAGTATTT
CATATGAAAGTTGTAGTGTGCTTATTTATTTTTTTGTTGCTTTGGAATGTTTTGTTTTCTTTTCTCTATGCTAGTATCTGTGTTAA
CAATAACTTATCACCG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_180899 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1751 | 4e-193 |
| XP_002879449 hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp. lyrata] | 1739 | 1e-191 |
| NP_193166 ribonucleoprotein 1 [Arabidopsis thaliana] | 1177 | 2e-126 |
| XP_002870323 hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp. lyrata] | 1158 | 2e-124 |
| XP_002315580 predicted protein [Populus trichocarpa] | 1122 | 4e-120 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q98SJ2 DAZ-associated protein 1 | 444 | 6e-043 |
| Q96EP5 DAZ-associated protein 1 | 442 | 1e-042 |
| Q9JII5 DAZ-associated protein 1 | 439 | 2e-042 |
| P21522 Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog | 345 | 2e-031 |
| Q2HJ60 Heterogeneous nuclear ribonucleoproteins A2/B1 | 337 | 2e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22791 Putative RNA-binding protein | 1751 | 3e-193 |
| A5BK88 Putative uncharacterized protein | 1193 | 1e-128 |
| Q8W034 Ribonucleoprotein 1 (Fragment) | 1177 | 1e-126 |
| B9HSS5 Predicted protein | 1122 | 3e-120 |
| O23288 Ribonucleoprotein like protein | 1024 | 6e-109 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33410.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1752 | 1e-195 |
| AT4G14300.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1177 | 6e-129 |
| AT3G07810.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 643 | 5e-067 |
| AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 643 | 5e-067 |
| AT5G55550.1 RNA recognition motif (RRM)-containing protein | 592 | 4e-061 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
