RadishBase

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Information for unigene UN27032

FASTA Sequence

Unigene ID: UN27032	Length: 1888	SSR
GGAGAGGTGGCAAAGATGAAGTAAAGGAGGTGAGAGACGTAAAGCAAAGAGCAAAGGGGATCGTCACGAGAATCAGTGGCAAGTCT TTAGCTTTTTTAGGATTTTGATGAGCTCTGCAAATTTTTCTATCTTTTATCTTTCCTTTTTTTTTTTTTGATCAGCCATCTTCATA AGATCCTCGTGATTCCTCTTTAACGCCTCCTCCTACTTTTCAAGAAAAACCTCTCTGAAAAAATATTCAAAGTATATCTCTCCGTT TCTCTCGCCTTGTCTCCCTTTTCAGGTGATAACGATGAATCTGGGACGTGGGTCAGAAACACAGAAGAAAACTGGTTTAATAACCC ACAACCACTACACCATAACGACCTCAGATACAGTAGTGGACTTTCCCTTGAATCCTTCAGAGAACCTCCTTCTCCTTCTTCAGCAG CAATCTATTGATACTTCCTCTCCGTTGCAACACTTCACACTCGACTCTGCTCCACAACAAGAACAGTCTTTCTTGGCTACAAAAGC TTGCTTCACTTCTCTACTCAACGTCCCCACCAGTAACAACAGCAACATCAACAACAACCCTTTTGATGAACTCGGCTTCAGCTCTG GCTTTTTAGGACAAACACATGTAAACCTGACACCAAACTCCATGAGTTTCTCTGGTCTGAGCTCACCACCGGACTTTCTCTCTTCC CGGTCAACTCACCTGCCGGAAAAAATCACCGGAGTAGGTAACAGATTCACTCCTCTGGAGTTCACAGGAGTCACCAACGGCGTTTT CGAGAACAGAGCCAAGGTTCTCAAACCACTAGACGTCTTAGCTTCACCTACCTCGCAGCCGACGCTCTTCCAGAAACGAGCTGCGA TGCGTCAAAGCTCAAGCAGCAAAACGTGCAACTCGGAGTCTTCCTCCGAGATGAGAAGATCAAGCTACGAGCGTGAGAATCTCGAT GACGCGAGCACTGGAATCACAGACATCATCTCTGATGAGCATAACAACAACAACAACAAAGGCAAGAAGAAAGGAATGCCTGCTAA GAATCTAATGGCTGAGAGAAGAAGAAGGAAGAAGCTTAACGATAGGCTTTACATGCTCAGATCAGTAGTGCCCAAGATCAGTAAAA TGGATAGAGCATCTATACTTGGTGATGCTATTGATTATCTTAAAGAGCTTTTACAGAGAATCAATGATCTTCATACCGAACTTGAA ACTACTCTTCCACCGAGTTCTTCAAGCTTGCATCCGTTAACACCGACCACGCAAACGCTAAGTTACCGTGTTAAGGAAGAGTTGTG TCCTTCTTCTTCTTCTTGCTTTCCAAGCCCTAAAGACCAGCAAGCTAGAATTGAGGTTAAATTAAGAGAAGGAAAGGCAGTGAACA TCCACATGTTCTGTGGACGACGACCTGGTCTTTTACTTTCCACCATGAGAGCTTTGGATAACTTAGGATTGGATGTTCAACAAGCC GTGGTTAGCTGCTTCAACGGGTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGGCCATGATGTGGTGCCTGAACAGAT CAAAGCAGTGCTGTTAGACACTGTCGGTTACACCGGTTTGGTTTGATGAGTCCAGTGAAGAAGTATCTGTGTGAAAACAGAGCTAC ATCTAAGCCTTTTCATTAGTTCTGTAGTTTTCTTCTCACTTAGTTTTCATATGATAACTGTTTTATCTTTAGCTTTGAAACAAAAC ATGTGTTTTGCTTTTTACAACTTTTTATTTAGCTTTTCTTGAAGAAATGTGTTTTCCAATGATTTGCTCTTGTACAAGAACACGTA GAACACACATGGAAAAAGAGTAAAACAGTGCATCCACACAAAAGAAAGCTGGTTTTAGCTTTAAGATGTTGTTTCTCGCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172746 uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]	1198	7e-129
XP_002889974 predicted protein [Arabidopsis lyrata subsp. lyrata]	1179	1e-126
AEE00745 inducer of CBF expression [Brassica juncea]	1022	2e-108
ADY68771 inducer of CBF expression 1 protein [Raphanus sativus]	1001	5e-106
ACB70963 ICE1 [Brassica rapa subsp. chinensis]	877	1e-091

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LPW3 Transcription factor SCREAM2	1445	7e-159
Q9LSE2 Transcription factor ICE1	870	3e-092
Q9LSL1 Transcription factor bHLH93	259	2e-021
Q9ZVX2 Transcription factor ABORTED MICROSPORES	253	1e-020
Q9LXA9 Transcription factor bHLH61	246	7e-020

TrEMBL top hits (Blast detail)	Score	e value
D2DHG7 ICE-like protein	876	1e-091
Q6H104 Inducer of CBF expression 1 protein	863	3e-090
C0JP29 Putative basic helix-loop-helix protein BHLH23	832	1e-086
B8XJY8 Inducer of CBF expression 4	829	3e-086
B8XJY5 Inducer of CBF expression 1	821	3e-085

Arabidopsis top hits (Blast detail)	Score	e value
AT1G12860.1 SCRM2 (SCREAM 2); DNA binding / transcription factor	1199	2e-131
AT3G26744.1 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	871	2e-093
AT3G26744.2 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	871	2e-093
AT3G26744.4 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	871	2e-093
AT5G65640.1 bHLH093 (beta HLH protein 93); DNA binding / transcription factor	259	2e-022

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	6			100%

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