Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN27064

FASTA Sequence
Unigene ID: UN27064Length: 1309 SSR 
CTCTCCTCCCCCTCTCTCTCTCTCTACTCTCTGTTCACTCTCTATCTCTGAGAATGACTACGACAACAATCGGCGAACACATCAGA
CTCCGACGAGCCCGGAACCACCAAACCATCCGCCACAACGCCGCCGACGATGATCCGCCGCTGACACACGTCGTCCCTCCAATCTC
CCAGCCCACTCGGTTCTGTAACTCAGCAATGTCATCCTTCTCTCTCCTCACTTCCTCCAACGAACCCACAAAGAAGAAACAGCTCG
GCTTCCCTCAAGCTGCGTCCTTTCGCGGCATAAACTGCACCGCCTCCGCAGCTGCTCACGAGGTTTCTGTTCCCTCCGCGATTCGC
TCCTCCGCAGATTGGGACAACAAGAAGAAGAAGAGGAACAGGAAGAAGAAGAAGAAGAAGGTAAGAAGCTACGAGGATGGTTCGGT
TAGGTTCTTAAGCGAGTCTAGAGACGTTGATGGCGGCAACGGCTGCGTCGCGGTTCCGGACGTTTGGTGCGGTCCGGGACTAGGGT
TCTCGACGGATGCTGTGTCGGTGGATCCTCCGAGAAGGAATCTCCCGTCTTCGTCGCGTCGTAAAATTGACGTGGATAAGAACAAT
CCTAATCAAACAGAGGTTGAACCAACGTTGTTCTCGAGTAGATACCATGGCCATCTTCGGCGCCCTTACCCTGATGATCTTACCGA
GATGATGATGCTCCGGAATGGTTTTGTAATGGGAGGGACAACAGATTCGCTTGATCACTTCCATAACTTGAGGCTTGATGTTGATA
ATATGTCATACGAGCAACTACTAGAGCTTGGTGATAGAATTGGTTATGTGAATACTGGACTAAAAGAGAGCGAGATACGTCGTTGT
CTTCGGAAAATCAATCCATTCTTATCAAACACTCTTCTTGCTGATAGAAAATGCAGCATTTGTCAGGATTAGTATGAGAGAGAGGG
TCAGGTTGGGAAACTGGAATGTGGACACAGCTTCCATGTCCACTGCGTGAAGCAGTGGCTATCTAGGAAGAATGCTTGTCCTGTCT
GTAAGAAGACAGCATACGTCAAGGCTTAAGAGTGAGTTGTGTGTCTTGTTTAGTTTATGATATCTTAAGATCTTTCATTAAAATGC
CCCTATGTCTTTTGCATTTGCTGTATAGAACCAAATCATCTGATTCTTTATTTCATGCGTGTTGTTCTGTGATTTAGCAGTCATGT
GTGTGTTCTTGATCTTGTTTTCCTTTGTTGTTTTTTTTTTATATGATTGAAATACTATTTTGTAAGAACAACAGTTTGTGACCTAA
GGATTCTGCAGCTTATACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_173239 RING/U-box domain-containing protein [Arabidopsis thaliana]6115e-061
AAM63662 zinc-finger protein (C-terminal), putative [Arabidopsis thaliana]6115e-061
XP_002890255 hypothetical protein ARALYDRAFT_312759 [Arabidopsis lyrata subsp. lyrata]5353e-052
AAF97276 Contains similarity to RING-H2 finger protein RHG1a (partial) from Arabidopsis thaliana gb|AF079183 and contains a Zinc finger (C3HC4 type) PF|00097 domain. EST gb|AV522036 comes from this gene5344e-052
ADK63390 C3HC4 type zinc finger protein [Brassica rapa]5282e-051

Swiss-Prot top hits (Blast detail)Scoree value
Q07G42 E3 ubiquitin-protein ligase RNF121372e-007
Q9NVW2 E3 ubiquitin-protein ligase RLIM1345e-007
Q9WTV7 E3 ubiquitin-protein ligase RLIM1345e-007
Q9DBU5 E3 ubiquitin-protein ligase RNF61239e-006

TrEMBL top hits (Blast detail)Scoree value
Q8LCH0 Zinc-finger protein (C-terminal), putative6114e-061
Q944L9 At1g17970/F2H15_166114e-061
Q9LMT3 F2H15.19 protein5343e-052
Q9C9T6 Putative RING zinc finger protein; 69105-673105211e-050
B9I2J2 Predicted protein4904e-047

Arabidopsis top hits (Blast detail)Scoree value
AT1G17970.1 zinc finger (C3HC4-type RING finger) family protein6112e-063
AT1G73760.1 zinc finger (C3HC4-type RING finger) family protein5224e-053
AT1G45180.1 zinc finger (C3HC4-type RING finger) family protein3073e-028
AT2G37150.1 zinc finger (C3HC4-type RING finger) family protein2975e-027
AT2G37150.2 zinc finger (C3HC4-type RING finger) family protein2975e-027

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
181  33%
 
101  33%
 
91  33%

Unigene MembersMember information