RadishBase

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Information for unigene UN27189

FASTA Sequence

Unigene ID: UN27189	Length: 788	SSR
CGAGTCTTTTACTTGCTTAGGTGAATGGGACTCCTCCTCTGTTTTTTCCTACCACCAAACCTATCCTCTCTGCGCCAATCATTTAT GACCTCAGGACGAGAAGGGCTTTTCTGGTAGCTTGGTCGAACCCTGGACCAGCAGGACTTGATCTGCCGCTGTAACGACGGTCATA CACATCATCATATGGTGGACTTCGAGACCCACTAGAACTTCGTGTCTCACTATCTCCCATGGGTCCTCTTGGAGGCTTGTCGTCAT TCTTCTCATTGGTATACCTTTTGTTTACATACACCTGTCTAATGAAGTCTCTTAATCGCTCGACATTACTTCCGTCAGATACTGAC TGCATCTGTTGATCCAGTCCTTTAAAATAAATATCCTTAGCATGCTGATTGCCACCTTCTTTTAGAGCAGAGACTTCTTGGGAAGT AAATTTAGCCATTGATATGGACTTAACACGATGAGTAAACTCACGGTGTACTCCACTGCAGTTGGTACAAACAAAAGTCCAGAAAG AAGTGCAAACATATTGTGGTCCGAGGCTGTTACAGTTGATACACCTCTTGTTGTGTGGTAGTTTGAGAAGACTCCTAATAATCCGC TCGTTCTTCTCCTCTTCTTTCACCCCACCACCCATCTGGCCAGGGTTTGACGATTCAACGACGACGATCTAAGAGTTTTTCTGATT TTTTTTCTGTCTCTCCTAGTTGGAATGAATCACATAGATAGATAGATGACTTCTTTCTTTCTTTCTAGAGAGAGAGAGAGAAAGTC TCTTGTACAGCACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_193071 NSP (nuclear shuttle protein)-interacting GTPase [Arabidopsis thaliana]	781	4e-081
XP_002863138 hypothetical protein ARALYDRAFT_358984 [Arabidopsis lyrata subsp. lyrata]	763	5e-079
CBI28100 unnamed protein product [Vitis vinifera]	630	1e-063
XP_002324405 predicted protein [Populus trichocarpa]	620	2e-062
XP_002281316 PREDICTED: hypothetical protein [Vitis vinifera]	612	2e-061

Swiss-Prot top hits (Blast detail)	Score	e value
Q8RXE7 Probable ADP-ribosylation factor GTPase-activating protein AGD14	508	9e-051
Q2TA45 Arf-GAP domain and FG repeats-containing protein 1	249	1e-020
P52594 Arf-GAP domain and FG repeats-containing protein 1	249	1e-020
Q8K2K6 Arf-GAP domain and FG repeats-containing protein 1	249	1e-020
Q4KLH5 Arf-GAP domain and FG repeats-containing protein 1	249	1e-020

TrEMBL top hits (Blast detail)	Score	e value
Q8W4K6 At4g13350	781	3e-081
B9ILJ3 Predicted protein	620	1e-062
B8ADW7 Putative uncharacterized protein	575	2e-057
Q6H8D7 Rev interacting-like protein-like	571	7e-057
Q6H8D8 Os02g0208900 protein	571	7e-057

Arabidopsis top hits (Blast detail)	Score	e value
AT4G13350.1 NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase	781	2e-083
AT4G13350.2 NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase	781	2e-083
AT1G08680.1 ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding	508	9e-052
AT1G08680.2 ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding	508	9e-052
AT1G08680.3 ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding	508	9e-052

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information