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Information for unigene UN27200

FASTA Sequence
Unigene ID: UN27200Length: 1350 SSR 
GAGCCTTCCAGAGAAGAAGAAGAAGAAGAGATGTCTATGGGTATGGGGAATCTCATGCGGAAGTTGGGAAGTGGAAAAGGCAAAAG
CAGTCCAAGTTTTACAGAGAGAACGACGTCGTCTATATCTGGTGAACCATCGCCGTCGGCTCTTTCTATCTCAGTTACCGACAAGA
TTAACGCTGCCAAGAAGAAGTACGCACTCATACCTGACCGGTTCACGTCCCTGGACCAGGGAAAACTTCTTTCAATGGAAAATCTC
TTCACGCTCTCGGAAGAACTCAGAATCCATATGAGAAGGCAATCTTTGTTATCGGCCAAACGTTAGCTCCCTTCGACGAAGACAAC
CTCATCCCCTGTTTCGGCTTTGGCGACTCAACGACCCATGACGAGGAAGTGTTCAGTTTCCACAGCGACAACTCCCCATGTCATGG
CTTTGAAGAGGTCTTAGCATGTTACAGAAGAATCACACCTAACTTGATTTTATCAGGGCCAACGTCTTACGGACCGCTCATTGATG
CTGCTGTCGACATTGTTGAAAAGAGCAACGGACAGTTTCACGTTCTGGTGATTGTCGCTGATGGGCAGGTGACGAGAGGTTTCGAT
AAGGACGATGGAGAACTCAGTAAACAAGAGAGAACAACTATCGACGCCATTGTTAACGCCAGCTCATATGCTTTGTCGATTGTTTT
AATCGGTGTTGGAGACGGTCCATGGGAAGACATGAGGAAGTTCGATGACAAGATCCCTAAGCGTGAGTTCGATAACTTTCAGTTTG
TGAATTTCACAGAGATCATGAAGAGAGATTCATCAGAGTCAGCCAAAGAAACTGCCTTTGCTCTTGCTGCTCTCATGGAGATTCCC
TTTCAGTATCAAGCAGCTACTGAACTCAGCTTACTCGGGAAAACAACGGGCTTAGCTAAGAAAATAAACCCGAGGCCACCACCTAT
TCCTTACACGCCTACTATTCGTACTGACCTACCATCACCTGCATCAGACGAACATACACAGAATTGCCCAATTTGTCTGACTAGCC
GGAAAGACGTGGCTTTTGGCTGTGGTCACATGACGTGTAGAGATTGCGGATCCAGGATATCAAACTGTCCCATCTGCAGAGTACCG
ATCACAAGCCGGCTAAGGCTTTACACGTGACCGGTGCCTTTGCACACAACAAAACACTTGCACATACTGTCTTTCTCCATCTTAGA
ATCTCCGGCTTGGTGTTTATCAAGTGTCTCTTACATTGTTCCAGAATCAGCTCGTACCATTCAGTTTCCTATGTACTATAAATATT
AGTTAGCTTTGCAAGCAAGAATGATGAAGATTAGCAATGTAACATTTTTATTCACTGTCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887783 hypothetical protein ARALYDRAFT_477103 [Arabidopsis lyrata subsp. lyrata]14073e-153
NP_565206 Ca(2)-dependent phospholipid-binding family protein [Arabidopsis thaliana]14021e-152
XP_002316157 predicted protein [Populus trichocarpa]12343e-133
XP_002311280 predicted protein [Populus trichocarpa]11913e-128
XP_002443815 hypothetical protein SORBIDRAFT_07g002700 [Sorghum bicolor]11035e-118

Swiss-Prot top hits (Blast detail)Scoree value
Q9LY87 E3 ubiquitin-protein ligase RGLG28093e-085
Q9SS90 E3 ubiquitin-protein ligase RGLG17951e-083
Q09221 Copine domain-containing protein 22725e-023
Q54FY7 Copine-E2001e-014
Q86K21 Copine-B1873e-013

TrEMBL top hits (Blast detail)Scoree value
Q9SAL0 At1g79380/T8K14_2014027e-153
B9HYC3 Predicted protein12342e-133
B9HI27 Predicted protein (Fragment)11912e-128
C5YMZ0 Putative uncharacterized protein Sb07g00270011033e-118
Q8W0S8 Putative uncharacterized protein9985e-106

Arabidopsis top hits (Blast detail)Scoree value
AT1G79380.1 copine-related14033e-155
AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase8092e-086
AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase8092e-086
AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase8092e-086
AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase8092e-086

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  100%

Unigene MembersMember information