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Information for unigene UN27212

FASTA Sequence
Unigene ID: UN27212Length: 1290 SSR 
GGGATAGAAAGTGGTCCACTTCTCTCTCTCTCTCTACATCAAAGAAGACAAACCAGAGCAAAAAGAGCCGTTGAAGCCTAGATAGA
ATCTACTAACCCAAGAAGAGAGTATCCCTTCTCTTTCAATCTCAACACAATAGAAGAGAAAAAGACGCAGCTTTTGGAGTCATGGC
TGGTTTAAACGACGACGTCTCAGTCGACATTGAAGAGATCTACAATGGCGGCAAGGAACATCATGTCAAAACTTGCCATGGCTTAG
TTTCAGTTGTTGTCTATGGAGACCAAGAGAAGCCAGCATTGATCACTTATCCAGATGTAGCATTAAATTACTTGTCTTGCTTCCAA
GGACTGTTTCTCTGCCCTGAAGCAGTGTCCTTACTCCTCCATAACTTCTGCATCTACTATATTAGCCCCCCAGGACATGAGTTCGG
AGCTGCTCCAGTTTGTTCCAATGATCCTTCGCCTTCTGTTGAAGACCTAGCCAACCAGATTCTTGAAGTGTTGAACTTCTTTAGCC
TGGAGTCAGTGATGTGCATGGGGATCACGGCTGGTGCCTACATCCTTTCCTTATTTGCTATAAAACATAAAGATCGAGTTTTGGGT
CTGATTCTGATATCGCCTCTATGCAAAGCACCCTCATGGTCTGAATGGTTTTATTACAAGGTAGTGTCAAACTTGTTGTACTATTA
CGGCATGTCTGGATTGTTAAAAGATCGTTTCCTTCAGAGGTACTTCAGTAAGGAAGCTCGTGGTAGCTCTGATGTTCCAGAGCGTG
ATGTAGTACATGAATGCAGAAGGCTGCTTGGCGAAAGACACGGTATTAGCCTGAGGAGGTTTCTGGAAGCAATCAACAGGAGACAT
GACATAACAGATGGGTTGAGGAGTTTGAAATGTCGTACACTCATATTTGTTGGAGACCAATCTCCTTTCCACTCTGAGACTCTTCA
CATGGTGGCTGCATTAGACAGAAAATACAGCGCCTTGGTTGAGGTGCAAGCTTGTGGATCAATGGTGACAGAAGAGCAACCACATG
CGATGTTGATACCAATGGAGTTCTTTTTCATGGGCTTTGGGTTGCATCGGCCTGGTCGGGTTAGTGATAGCCCTACGAGTCCACTC
AGTCCGTCGTGTATTTCCCCGGAGCTTCTGTCTCCGGAGAGTCTTGGTTTGAAGCTGAAGCCAATAAAGACTCGGGTTCCCACCAC
GAAATGTTAAACCAAACATTGATTCATTTTTTTTCTCATATTCTTTGATTAAATTGTATTTGTTGTTGTACTCTCTTATATGTAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883979 ndr family protein [Arabidopsis lyrata subsp. lyrata]17253e-190
NP_179552 N-MYC downregulated-like 3 protein [Arabidopsis thaliana]17192e-189
NP_001077918 N-MYC downregulated-like 3 protein [Arabidopsis thaliana]16456e-181
XP_002330491 predicted protein [Populus trichocarpa]14082e-153
NP_200486 N-MYC downregulated-like 1 protein [Arabidopsis thaliana]13867e-151

Swiss-Prot top hits (Blast detail)Scoree value
O23969 Pollen-specific protein SF2111311e-122
Q9QYG0 Protein NDRG23352e-030
Q3ZBA8 Protein NDRG23343e-030
Q5RBN6 Protein NDRG23334e-030
Q7ZWV3 Protein NDRG1-B3308e-030

TrEMBL top hits (Blast detail)Scoree value
Q9ZUN1 Putative SF21 protein (Helianthus annuus)17191e-189
A8MRP5 Uncharacterized protein At2g19620.216454e-181
B9N5G7 Predicted protein14081e-153
Q9FJT7 AT5g56750/MIK19_2213865e-151
B9RRU1 Pollen specific protein sf21, putative13032e-141

Arabidopsis top hits (Blast detail)Scoree value
AT2G19620.1 Ndr family protein17214e-192
AT2G19620.2 Ndr family protein16471e-183
AT5G56750.1 Ndr family protein13863e-153
AT5G11790.1 Ndr family protein11839e-130

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
111  33%

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