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Information for unigene UN27242

FASTA Sequence
Unigene ID: UN27242Length: 1240 SSR 
TCTATCTCTCACTAGACTCACTAGACTCCATAGCTAAAAGCTTCTACTACATCTATAGCTGTCTCCACGCGCTTATAATTACTTCC
ACAGTGGCAAATCCACCTTCTCTCCTTTCATGGCCACCACCGCATCAACCATCCTCCACCATCCCTGACCACCACCACTCCTCTTC
CTCTGCCGCCGTTGGAATCAGTACACCAGACTACATGCTAGGCCTAAGAAACGTCATCCTCTTACCACCACCGTCGCAGATTACTC
ACCCCTCGGTGGAAGCAGATCACAACAAGCCAAGGAACAGTAATGTTGAAGAAAAAGTGTGCAGAGACTGTGGAAACAGAGCTAAG
AAAGAGTTTTTGTTCGAAAGGTGTAGAACTTGCTGCAAAAGCAGAGGATACAACTGTGCCACTCACGTGAAGAGCACGTGGATCCC
TTCTTCTTCTTCTTCTCAGCATCATCACTCTTCTTCTTCCTCTTCCGACAGGTACAAAAAGAAGCTCAAAATCGATCCTTCCGACA
AACCCAGTGTTTATACCGTTCCGACAACCACTTCTCGCCGTCAAGAGACGAGATTCAAAGAAGGGTTACCGGGAAAGATCGAAGCT
CCGGCGGTTTTCAAACGGACGAGAGTAACAGCGATAAGCAACGAAGAACAATCAGAGATCGGCTATCAAGCGACAGTAACCATAAA
CGGTCATGTCTTCAGAGGCTTTCTTCATTACTATGGTGTTGATCACAACAAAGCGTTTCCATGTCTTTCTAAAAAGTAGGATCTAA
TGTTACTAGACTAGAGAGTCTGCTCTGTTTCGAACGTTACACATTGTCTTTTATTATTATTAGTATTACTAGATGATGTTATTGTG
TTAGCATGTGAGGTTGTTACCGGGGTCAACACCAAACTGACGATTATAGTAACGAACCCTAGCTTCAACGGTGGCTCTGTTGGCTT
CATCACACTCCAAAGCACAGTTGATGGCGCGGATTGTTGCACCAAAGCCTTGAGGAAGAACGAGTTGGACTCTGTTGGTCCAGTAC
CGCCTTGTGGTGCGTTGAGGCCGTAGAAACAGATAGCTGTTCCTGCTGGCCCGTAGTTGAAGTTCCATGAAGCCGAAGTAGCCTTT
GGTTGGAATGCATTCCTAGAATGCATGGATATTATGTTGTTGCAGTAAGGATCCATCTATTTCTTCTATGTAGCAGAAATCTGAAA
CAAACCAAAAAGTATTATGTTTAAGCTGGTTGTACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191011 SHI-related sequence 6 [Arabidopsis thaliana]6941e-070
XP_002877977 hypothetical protein ARALYDRAFT_485843 [Arabidopsis lyrata subsp. lyrata]6894e-070
BAD10745 putative lateral root primordia (LRP1) [Oryza sativa Japonica Group]3023e-025
EAZ07891 hypothetical protein OsI_30146 [Oryza sativa Indica Group]3023e-025
EAZ43559 hypothetical protein OsJ_28180 [Oryza sativa Japonica Group]3023e-025

Swiss-Prot top hits (Blast detail)Scoree value
P27054 Endochitinase PR41839e-013
Q7Y1Z0 Chitinase 51811e-012
Q6K8R2 Chitinase 61783e-012
O04138 Chitinase 41774e-012
P29022 Endochitinase A1676e-011

TrEMBL top hits (Blast detail)Scoree value
Q9M2U4 AT3g54430/T12E18_1206948e-071
A2YXT0 Putative uncharacterized protein3022e-025
A3BVH0 Putative uncharacterized protein3022e-025
C7J6A9 Os08g0547600 protein3022e-025
Q6YT10 Putative lateral root primordia (LRP1)3022e-025

Arabidopsis top hits (Blast detail)Scoree value
AT3G54430.1 SRS6 (SHI-RELATED SEQUENCE 6)6953e-073
AT5G66350.1 SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor2447e-021
AT3G54420.1 ATEP3; chitinase2374e-020
AT1G75520.1 SRS5 (SHI-RELATED SEQUENCE 5)1962e-015
AT2G21400.1 SRS3 (SHI-RELATED SEQUENCE3)1953e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
104  100%

Unigene MembersMember information