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Information for unigene UN27436
| FASTA Sequence |
| Unigene ID: UN27436 | Length: 1406 |
SSR | | TGCAGAGTTTGTAGGCGAGTTCTGGAACGTGCTCCCTGAGGCTCTTCGTGATGTGATTCAAAATGGTGACGACTCTGAAAAAAAAT
CTGCACTTCGTTTGGTTAATATATGGGAAGAAAGGAAGGTTTTTGGATCTAGTGGACAGATTCTCAAAGAAGAGGTTCTGAGAAAG
CTGCCTGAAAACGGAACCAGAAACGTTGCGCTCGTGCCGCTTAAGCTTAAACAGGTAACTCCGCTGGAGAGAGTAGTGTCTGCTGT
TGAAGCTCTTCACGGAGTTCAGATTGATGAGCATGATATTGTTGGAAAATGTACTAATGTTGTGGGTTACCTTGAGAAAGCTGCTC
AGGAGGTTGACAGAGATCTTAGTTCAGGACACACCCCTGGCCCTGCGGTTGTAAAGGAGGTGCAGGGACAACATACCATACTGAGA
GACTGCATCGTACAGCTAGTGGCAATGGAAACGTCCAGAACTAGTCTTATCTCTCATTTGAGAGAGGCTTTACAAGAACAGGAAGT
CAAGCTGGAGCAAGTCCGTAACCACCTTCAGCTTGCTCGGTTTCAATCAGACCGAACTGGTGATCTCTGCAAACAGCTTATAAACC
ATGGCAGTAGTTCACACCCTCCTGCTACAGAAGAAGAGTCGAAAGAAGTCGTCAAAGTTTCATTCACTGCATCTGCACCGGTTATG
TTTGCCTCGAACCCACCAACTCAGTCAGTGGTAGTAGACCCAAGAAAAACTGAAGCTGCAGCAATGGTAGCTAAGCTAACTGCTTC
AACCTCCTCAGCCGAGATGCTCTCCTACGTTCTCTCCTCCTTTGCCTCCGAAGGAATCATCGGAAACAACCCACCTACTGTAACAG
AAACACCACCATCCGACGCTTACCCGCCAGAGAAACGGCCCAAGCTTCAAAACCTTGACCAGTCCTATCTCCAACAGAACACATCC
TCAGCCACCACCAGTCCTCCACCACCACCACCAGCATTCCAGCTTCAGCCTCAGTTCTTGCAGCCGTTACAGCCTCCTGGTCCTGT
AAACTCCACACCATTCAGCTACAGCATAGCAACCACTCAACAACAACAACAACAACAAGGTCCTTGGATTCCTGGGCTCACCTCGC
TTCCAACAACCTCTGCTCCATCAGATAATCCATACCAAAAGTTTCAGGGACAAGATGGTTTCTATGGAACTACCAACTCACCGTCC
TCTATGACACCTGTTACTCGGCAGTAGAAGAAGAAGAATGTATTTTGTTAGGGTTAAGAGAGCTAAAAGGCTCACCTTTTCTTGGT
GTTGTTAAAAAGTACAGTACTAATGGTGTGTTTGATAGGATTTGAAAATGTGCAAGTCTAACCATATGCTTTTTCTGCACATATCC
TTGGGTCATTTTGTCTGTGAAACTTAAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB01080 unnamed protein product [Arabidopsis thaliana] | 922 | 5e-097 |
| NP_189335 ENTH/VHS family protein [Arabidopsis thaliana] | 922 | 5e-097 |
| XP_002875349 hypothetical protein ARALYDRAFT_484483 [Arabidopsis lyrata subsp. lyrata] | 889 | 3e-093 |
| CBI21316 unnamed protein product [Vitis vinifera] | 851 | 8e-089 |
| XP_002512894 conserved hypothetical protein [Ricinus communis] | 736 | 2e-075 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q66GK1 At3g26990 | 1273 | 7e-138 |
| Q9LSD7 Genomic DNA, chromosome 3, P1 clone: MOJ10 | 922 | 3e-097 |
| B9RH35 Putative uncharacterized protein | 736 | 1e-075 |
| B9GF66 Predicted protein (Fragment) | 716 | 3e-073 |
| B9SY93 Putative uncharacterized protein | 448 | 3e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G26990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink). | 1546 | 8e-172 |
| AT5G65180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink). | 209 | 9e-017 |
| AT5G65180.2 unknown protein | 209 | 9e-017 |
| AT5G10060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink). | 174 | 1e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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