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Information for unigene UN27443
| FASTA Sequence |
| Unigene ID: UN27443 | Length: 1235 |
SSR | | CGTCCAAAACACGTAGAGCAGTTACATTTTTGATACTGTTGTCTTTTACAAAAATCTTTTATCATCATTCTCTTAAGGAAAATAAC
ACCCTACCAGGATCTCTCAGCAAGTATACAAACAAACAGACAACAATATTTATAAAGAAAGGTCTCTCAGATCTCTATCCTCTCTT
ACTCATTGCTCTTACCGAGCTCTACCTCTCTCTCTCTCCCGTGTTCCTAAACTGGAACAATTTATATGGGGAGATGATGAGCAAGG
ACTGAATGAAAGAATGCACCTCGTTTAAATTTCTGTTTTGTCATAACCCGTTAGTAGTGATGATCTGCCTGGAAAACCTCATTGTT
GAGCGTTGTTGGTCCATGTTCCAGACGAAGCCAGGCATGTCAAACCGAGGACCCGCTACTGTTCGGTATATGAACACTCTCTCAAC
AGGGCAGCTCTCAGGTCTCGAGTCAGGTGGACCCCGCTCATCGATGACTTCCACATTGAGCATTGGCATTTTCTGTCCTAACAACT
TACAGGCTCCAAAACTCACGGAACAAGAAGACATCCAAAGAGATCGCATTGTCTCCAGCTTTGAAGCATTTGCCAATAGCGCCTTG
TCTCCAAAAGGGCAGTCTCTTATCTCTAGTTTCCTCAGGCTATCGCACCCTGACAAAACATGATGCATCCCTAAGTCACTGTCTCC
TGCAAACGCCACTGAGAGCATTTTCATCTTCTTTGCATACTTCCCAATGTATTCAAAAACTTTGTCCGTCAACAGCCCTGATAGGG
AGAGCCGCCGTAGATCTTTGCAGTGCTCAACTATGGCTCCGAATCCCATATCCAGTGGCTCTAGTGTTAGATGGTCAGGGGCTTTC
GGCTCAATGATGCACAAACGGAAGCGAGTCATGTTGGGACGGTTCATAGCAATGGTTACCAACGCATCATTGGTCATTTGGCGGCA
AAAGTAAAGAACCGACTCGAGCTTTGGACAGCCAACAGAGACGGAGACAAGCCCTTTCTCCGTCAATGCGACGTTTGGCTCCATTA
CAAAAGGCTCAGACGGAAACACTCTCAGCTCTGTAAGGTCCTTGCAGGTTGAAGCGAGCACATCAAGACCAGCATCTTCGATGTAG
TCCAGCACCCAGAGCCGCTGCAATTTATGACATTGGCTAATAAGCTTGACAAGATCATAGCTCTGGACTGTTGCATAACTCAGGTT
CAAAGTCGTAAGCCGACTGCAAACCGAATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567135 protein TRANSPORT INHIBITOR RESPONSE 1 [Arabidopsis thaliana] | 1509 | 4e-165 |
| XP_002878489 hypothetical protein ARALYDRAFT_907876 [Arabidopsis lyrata subsp. lyrata] | 1472 | 7e-161 |
| ACX31301 transport inhibitor response 1 [Dimocarpus longan] | 1317 | 7e-143 |
| ADV56682 F-box/leucine rich repeat protein [Phaseolus vulgaris] | 1306 | 1e-141 |
| XP_002520681 TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] | 1303 | 3e-141 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q570C0 Protein TRANSPORT INHIBITOR RESPONSE 1 | 1513 | 5e-167 |
| Q9ZR12 GRR1-like protein 1 | 1082 | 5e-117 |
| Q0DKP3 Transport inhibitor response 1-like protein Os05g0150500 | 981 | 3e-105 |
| Q7XVM8 Transport inhibitor response 1-like protein Os04g0395600 | 944 | 5e-101 |
| Q9LW29 Protein AUXIN SIGNALING F-BOX 2 | 918 | 5e-098 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| D0ES26 Transport inhibitor response 1 | 1317 | 4e-143 |
| B9S3W2 TRANSPORT INHIBITOR RESPONSE 1 protein, putative | 1303 | 2e-141 |
| A4KA30 Transport inhibitor response 1 | 1292 | 4e-140 |
| B9I9W7 F-box family protein | 1280 | 9e-139 |
| C7E4R3 Transport inhibitor response 1 | 1273 | 6e-138 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62980.1 TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase | 1514 | 4e-168 |
| AT4G03190.1 GRH1 (GRR1-LIKE PROTEIN 1); auxin binding / protein binding / ubiquitin-protein ligase | 1082 | 4e-118 |
| AT3G26810.1 AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase | 918 | 5e-099 |
| AT1G12820.1 AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase | 869 | 2e-093 |
| AT5G49980.1 AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase | 735 | 8e-078 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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