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Information for unigene UN27486
| FASTA Sequence |
| Unigene ID: UN27486 | Length: 1231 |
SSR | | AGATATCTGAATCAAATTATTTTTTTCAGACTGGTGAATAATAAACAAGATCAGTTTTAAAAACACTTGTAAGTTGTAACCATACT
TAAATCTTTATTCTACTAATCTAACCATCTCAGAAACTAAACAAACCATGCAGCCTTAGATTTGCCTTATCCTTCTCAAGCCGGTC
TTATAGAAGTAAGAATGTTGTAACCTTTTATGTTAGGAGCTAGGGGAAATAAAGCTCATTATTATATTCCTGTTTCACATCATCAG
TGAAACTCCTTTGTTGTTGCTTGATTCTTCTAAGATGCAATGACAGCTGCAGCAGATTAACTGTGGATGATGAAGTACTAGTTTTG
GTCTTGCCAAGATCGGTCCTCAACGGTGGTTGCATGTGATGATAGCCTATTGCTAAGTGACTCAAAATTTGGTTTGGTTGAGTAAT
TGAGAAACTTTTGTTTGGAGTTTCGGAGAAGTGTTGTTGGGAGTGAGCTGACAGATGAAGTGAGCACCACAAGTAGGTTCATCTCT
GAAACTCACGAGTCTACTTGCATGGTGGTGGTCTTGCTCATCCATTACTCTGTACAAGAAACTACCAGGAAACTTGTTACCTTGAG
GAACAGGCTTATGCCGGTTCTGCTGCTGCTTACCGGGTAGGAAATAGAAAGAAGGCTTCCTTCTTCGCTCATTGTGACCGGCTAAT
CGTCTTCTGCAACTTCTTTTCCCATCATCAAACTCTGAGAGGAAATGAAACCTGCTGCACTGTTGGCAGAACCTCTGTTCAATACC
GTTAACTATAACCATAGAAGACTTTGAGTGAGTCTCGCAAACTCTATGCCTTTTGTGGTAATCTTTAGAAGAGCTGAGATCCATAT
TGCAACCATAGACTTGACACAAGGGAGAGCTTGAAGCTCGAGGCTTTTTAGCCGCAAGAGTAAAGTCTCTACCATCATAGTTCCCG
TAATCCATAAAGCTCCTAAGTTTGAAATCTTGCCTAGACAAGTTTGAAGAAGAAGAAGAAGACAGGTTCTCATTAGCGTGTAACAA
GCTGAATCCATTAACATCATCCTTGTCAAACTCATTAGAGAGTCCCTGAGACATGGATCTTGGATTCTCAGGAAAAGAATCAGAAG
GTGGAAGGGAGGTTTCATTAGGCAAGAAAACACTTGTCCCATAGCTCCAAGAATCCATCAGCAAAACAGTTATAAGAAGAACAGAG
ATACATAGAGAAACAGGGGAACTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACG60678 unknown protein [Brassica oleracea var. alboglabra] | 738 | 9e-076 |
| XP_002887224 hypothetical protein ARALYDRAFT_339154 [Arabidopsis lyrata subsp. lyrata] | 673 | 3e-068 |
| AAF27058 F4N2.13 [Arabidopsis thaliana] | 573 | 1e-056 |
| NP_177077 squamosa promoter-binding-like protein 6 [Arabidopsis thaliana] | 473 | 5e-045 |
| AAK43931 similar to squamosa-promoter binding protein 1 isolog gi|1707009 [Arabidopsis thaliana] | 473 | 5e-045 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94JW8 Squamosa promoter-binding-like protein 6 | 473 | 2e-046 |
| Q9S840 Squamosa promoter-binding-like protein 2 | 336 | 2e-030 |
| Q8S9L0 Squamosa promoter-binding-like protein 10 | 326 | 2e-029 |
| Q9SMX9 Squamosa promoter-binding-like protein 1 | 323 | 5e-029 |
| Q8GXL3 Squamosa promoter-binding-like protein 8 | 317 | 3e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B4YPV6 Putative uncharacterized protein | 738 | 6e-076 |
| B9REB5 LIGULELESS1 protein, putative | 402 | 6e-037 |
| A5B110 Putative uncharacterized protein | 388 | 2e-035 |
| B9HXH7 Putative uncharacterized protein | 381 | 2e-034 |
| B9RLK6 LIGULELESS1 protein, putative | 377 | 4e-034 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G69170.1 squamosa promoter-binding protein-like 6 (SPL6) | 473 | 2e-047 |
| AT5G43270.2 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor | 336 | 1e-031 |
| AT5G43270.3 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor | 336 | 1e-031 |
| AT5G43270.1 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor | 336 | 1e-031 |
| AT1G27370.1 squamosa promoter-binding protein-like 10 (SPL10) | 326 | 2e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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