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Information for unigene UN27631
| FASTA Sequence |
| Unigene ID: UN27631 | Length: 1497 |
SSR | | AAGACGAACGTCGTTGATCAAACCAAAAGAAAAAAAAAAAGAGAAAAAAAGAAGAAGATAAATTTGGATGTTTTGTTTCTGTAGTT
TCCTTTTTAACTAAAACTCATAATTTATACTGAATAAACCTTTCAGATATTTTTTAAATTATAATAAATTAATTTTTTTTAAATCA
AAGATATAGTAAACAAACACCAAACGGGATTTGGGTTAGTCCAACAATACACGTTCTTCCACTAAATACGTTTGGTACTGAATAAT
CAGGCCCGTTTCTTTATATAGCCCAACAATACACGTTGTTGCAGTCCTTTTTTCGTCCTAACCAAAAGTACATTAGCAAGAGCCAA
TCAAATCACTAACACGTGTTCTTTTTGTAGGCGAAGTACGTTTACGCAGCATGTTCACGTCTTAACGAATGAGATAATTACACGTG
GCGAATGGAGTTCCCTGTGGTTCTATCCTCCTTATCGTCCTCTCGTCAAGCCCTTTTCCAAGTCACTCTGAAAAGGAAACATAACG
AAGGAAAGAAAAAAGCCAGATTCTCTCCTTCTGCTACTTATACATATTTCGATAGAACAGCAACAATGGTGTGAATAAAGTCGCTG
AACTTGTAAAATGGAGTGTGTTGGTGGTGCTCGCAATTTAGCTGCAATGGCGGTCACGGCTTTCCCGTCTCGGAGTTCCCGGAAGA
GGTTTCCGGTGGTGAAGAGATACAGTTTTAAGAATCTTCGGTGTGGTTTGTGTAGAGTCGTCAGAGCTAGCGGCGGCGGCGGCGGA
GGAGTAGGCTCCGGTGGTAGCGAGAGCTGCGTTGCCGTGAGGGAGGATTACGCCGACGAGGAAGATTTCGTGAAGGCTGGTGGTTC
GGAGATTACGTTCGTTCAAATGCAGCGGAACAAAGACATGGATGAAGAACAGTCCAAGCTCGTTGATAAGTTACCACCTATATCAA
TTGGTGATGGTGTTGGTGGTGCTTTGGACCTAGTGGTTATTGGTTGTGGTCCTGCTGGTTTAGCCTTGGCTGCTGAATCAGCTAAG
TTAGGTCTTAAAGTTGGACTGATTGGTCCGGACCTTCCTTTCACCAACAACTACGGTGTTTGGGAAGATGAATTCAACGATCTTGG
CTTGCAAAAGTGTATCGAGCATGTGTGGAGAGATACTATTGTGTATCTGGACGATAACAATCCCATTACAATCGGTCGTGCTTATG
GAAGAGTTAGTCGACGGTTACTTCACGAGGAGCTCTTGAGGAGGTGTGCCGATTCAGGTGTCTCGTATCTAAGCTCAAAAGTTGAG
AGCATAACAGAAGCTCCCGATGGCCTTAGGCTCGTTTCCTGCGAAAGAAACACCGTTGTTCCCTGCAGGCTCGCCACTGTTGCTTC
TGGAGCTGCTTCGGGTAAGCTCTTGCAATACGAACTTGGAGGGCCTAGAGTCTGTGTTCAAACTGCTTATGGAGTAGAGGTTGAGG
TGGAAAACAGTCCATATGATCCAGAGCAGATGGTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACM68703 lycopene epsilon-cyclase [Brassica rapa subsp. pekinensis] | 1369 | 8e-149 |
| ADK27327 lycopene epsilon-cyclase 2 [Brassica napus] | 1367 | 1e-148 |
| ADH59742 lycopene epsilon-cyclase [Brassica napus] | 1262 | 2e-136 |
| XP_002864493 hypothetical protein ARALYDRAFT_918865 [Arabidopsis lyrata subsp. lyrata] | 1127 | 9e-121 |
| NP_200513 lycopene epsilon cyclase [Arabidopsis thaliana] | 1118 | 1e-119 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q38932 Lycopene epsilon cyclase, chloroplastic | 1267 | 2e-138 |
| O65837 Lycopene epsilon cyclase, chloroplastic | 911 | 4e-097 |
| Q9M424 Neoxanthin synthase, chloroplastic | 298 | 5e-026 |
| Q43578 Lycopene beta cyclase, chloroplastic | 286 | 1e-024 |
| Q42435 Capsanthin/capsorubin synthase, chromoplast | 283 | 3e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9VUW5 Lycopene epsilon-cyclase | 1369 | 5e-149 |
| A2Q6A0 NAD-binding site | 985 | 2e-104 |
| A5BQ04 Putative uncharacterized protein | 968 | 2e-102 |
| B9RK92 Lycopene epsilon cyclase, chloroplast, putative | 955 | 6e-101 |
| Q2VEX5 Putative lycopene epsilon cyclase | 946 | 6e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G57030.1 LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase | 1267 | 2e-139 |
| AT3G10230.1 LYC (LYCOPENE CYCLASE); lycopene beta cyclase | 272 | 5e-024 |
| AT3G10230.2 LYC (LYCOPENE CYCLASE); lycopene beta cyclase | 156 | 1e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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