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Information for unigene UN27652

FASTA Sequence
Unigene ID: UN27652Length: 997 SSR 
CTGTTGTTTCTCTCCCTATATTCACCGTTTCCTACGAAACTCTTTACGACTCTCTCTCTCTCTCTCTCAAAAGAACCTCTTCTACA
GTGTGTGTGCAATGCTCAAGGAAAGACGGGTTTTGCCGGTTTCGAGCAACAACAGAGGCAGGGTATCGCCTTACCCGCTTCGCTCT
TGTCGGAGCAAGAAACAAAAAGAAGCCGAGTCATCATCATCACCTCTGGAGTCAGAGAGTGTGAGTGAATGGGAGGACGTCAGGTG
TGTGATCTGCATGGAGCCGCCACACAATGCCGTCCTCTTGCAGTGCTCTTCCTTCTCCAAAGGATGCCGTGCTTACATGTGCGACA
CAAGCGCCCGCCACTCCAACTGCTTCAAGCAGTACCGCAGAAACAACGACAAGAGCACAAGCCGCTGCTGCAGTCTCAGGGCCCTT
AACTGTCCCTACTGCAGAGGAGAGGTTTACGGGACGGTGAAGTCTACGTGCGCGCGGAGATTCATGAACGCGAGACCCAGGTGCTG
TTCTATGGACAAGTGTGGTTTCTCTGGGACCTATTCTCAGCTGAAGAGTCACTTGAAAGCTGAGCATCCGGGTTTTACACCTCCGA
AAGTGGACCCTCTGGAGAAACGCAAGTGGGAGGACCTGGAAAGAGCGGAGTTTATCGAGATTATCAACGCTCGTCATAGATGGGAA
TCGGAACAGAGATCTCTTTATCAGCTTCCACACCACCATCCCTTGATCGATCTCAACTTTGATGCTTTCATGCACAATCTTTTTGC
TGGTGTAAGGGGCCAAGCAAGTGGTGACAATACTCGCATGCCCCGATCAGAGTTCCATGGTATCAGAGGGACTCCGTGATGATTAT
TCCAAGTGCCTAGTCCAAGTTTTGATTTTTATCCATACTGTACTCTTAATTGTTTTAGGTTTTTATAGTGACATCAGCTCTTGTTG
TAGGCATACCTTGCATTGTCTGTATTTATGTTTCAGTTAGTCAAGTGTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_563977 uncharacterized protein [Arabidopsis thaliana]9806e-104
AAD39672 F9L1.39 [Arabidopsis thaliana]9672e-102
XP_002890104 F9L1.39 [Arabidopsis lyrata subsp. lyrata]9662e-102
XP_002889304 predicted protein [Arabidopsis lyrata subsp. lyrata]5622e-055
NP_178139 uncharacterized protein [Arabidopsis thaliana]5479e-054

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5E6 Putative uncharacterized protein At1g154309804e-104
Q9XI25 F9L1.399671e-102
Q3E7F0 Uncharacterized protein At1g80220.15476e-054
B6TQY7 Putative uncharacterized protein4275e-040
B4G170 Putative uncharacterized protein4194e-039

Arabidopsis top hits (Blast detail)Scoree value
AT1G15430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).9821e-106
AT1G15430.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).9821e-106
AT1G80220.1 zinc ion binding5582e-057
AT2G26050.1 zinc ion binding3701e-035
AT1G68140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3521e-033

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
181  25%
 
103  75%

Unigene MembersMember information