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Information for unigene UN27658
| FASTA Sequence |
| Unigene ID: UN27658 | Length: 1743 |
SSR | | CCATTGGGCGTTGTCAGCTAAAGCTTCAAAGCTTGTTCTTCTAAGCTGAATTGATAAAAACCCATGGCCTTATGAAGTTCACCGTC
CTAATCCCCAGCTCCAGGTCTCCTTCATTCTTCTCTTTCCAGCTCCTTGTGTGGTTGCGGATTTCTCAGGCGGAGGGAATTTGAGA
ATTTAGGGTTTCATGATTCATTGTATTCCCCAAAATTGATCTTAGGGTTTGCTCTGTAATGGAATAGCGCCTCGTCTCTCTTGTAA
TTGGCGTCTTCTTCTTCTTCTTAGCTGACACGATGAACCTGGATTTGAACCTAGGCCCTGGTCCCGAGTCAGATCTCCAGCTGCTG
TCGTCAAACGAAACTGTCAACTTGGCTGATTGGACTATTACCAACCCATCTCACAGATCCTCCTCTGAAGCTACTGTGACCAGGAT
CAGAACCCGGCACAGGACGCGGTTCAGACAGCTTAACCTCCCCATCCCTGTTCTCTCTGAAACCCACGCCATGGATATAGAGCTGA
ACCAGTTGATGGGAAGTGGAGCTGCTTTGCAGACTGGGGAAGGTAGTGAAAGAGGCAATGAGGATCTGAAAATGTGTGAGAACGGA
GGAGAAGCTATTGGGGATGGTGTATCAGAGAAGAAAGGGGATGTTGAGAAGAGCAGTGGCGGCGGCGGCGACGGGAACTTTTTCGA
TTGTAATATATGTTTGGATTTGTCAAAGGAGCCGGTTCTCACCTGTTGTGGCCATCTCTACTGCTGGCCTTGTCTGTTCCAATGGT
TACATATCTCTGACGCCAAGGAATGTCCTGTTTGCAAAGGAGAGGTGACTGCTAAAACCGTGACGCCGATATACGGGCGTGGGAAC
CATAAGAGAGAAGTCGAGGAGAGTTTAGATACCAAGATCCCTATGAGACCGCATGCTAAACGCATCGAGAGTTTGAGGAATACGAT
TCAAAGGTCTCCTTTTACAATACCGATGGAGGAGATGATTAGACGTATACAGAGTAGGTTTGAGAGGGACTCAACCCCTGTCCCTG
ATTTTAGCAACCGGGAGGCTTCAGAAAGAGTGAACGATAGAGCCAACTCGATTCTTAACCGGTTGATGACTTCTAGGGGAGTTCGA
TCAGAGCATAACCAGTCTAGTGCTGCTGCAGCAGCGGCAGCAGCTGAGGATATTAATCTAAGTCCAGACATTGCTGCTCCTGATCT
TGAAGGAGAAACCACCACGAGATTCCATCCTCTGTTGATCAGGAGACAGTTACAGTCACACAGAGTGGCGAGGATCTCGAATTTCA
CTTCTGCATTGAGTTCTGCCGAGCGGCTTGTGGATGCGTATTTTAGAACTCATCCGTTGGGGAGGAACCACCACAACCACCAAGAG
CTAAACCATCATTCTCCTGTTGTGGTTGATGATAGAGACTCTTTCTCAAGCATTGCAGCTGTTATAAACTCTGAGAGTCAAGTGGA
CACTGCAGTTGAGATTGATTCCATGGTCACTCTTTCCACATCTTCTTCGAGGAGAAGGAATGAGAATGGGTCGAGGGTTTTTGATA
GACAGTGCTGATTCTCGCCCGCCTAGGAGAAGGAGATTTACTTGAAACAAAAGCTTTCAATCTGTTGGAAGAAGATGATGATGATG
AGGAAGGAGGAGGGGAGGAAGAAGATTGTAACTGTATTTTTCTTTTGTTGCTTGTTGGTTTGTTGTATTTTTGATTTGTAATTTTC
TCAATAGGGATGGTATTTTTAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876453 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1858 | 2e-205 |
| NP_191362 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1828 | 6e-202 |
| CAB67631 putative protein [Arabidopsis thaliana] | 1798 | 2e-198 |
| XP_002530725 rnf5, putative [Ricinus communis] | 1057 | 1e-112 |
| ACU23276 unknown [Glycine max] | 991 | 7e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6PC78 RING finger protein 185 | 238 | 6e-019 |
| Q99942 E3 ubiquitin-protein ligase RNF5 | 237 | 7e-019 |
| O35445 E3 ubiquitin-protein ligase RNF5 | 235 | 1e-018 |
| Q5M807 E3 ubiquitin-protein ligase RNF5 | 235 | 1e-018 |
| Q96GF1 RING finger protein 185 | 231 | 4e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RXF2 At3g58030 | 1828 | 4e-202 |
| Q9M2P5 Putative uncharacterized protein T10K17.240 | 1798 | 1e-198 |
| B9SXK6 Rnf5, putative | 1057 | 1e-112 |
| C6TK36 Putative uncharacterized protein | 991 | 4e-105 |
| B9SAM1 Rnf5, putative | 832 | 1e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58030.1 zinc finger (C3HC4-type RING finger) family protein | 1828 | 2e-204 |
| AT3G58030.2 zinc finger (C3HC4-type RING finger) family protein | 1828 | 2e-204 |
| AT3G58030.3 zinc finger (C3HC4-type RING finger) family protein | 1828 | 2e-204 |
| AT2G42030.1 zinc finger (C3HC4-type RING finger) family protein | 630 | 2e-065 |
| AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein | 250 | 2e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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