RadishBase

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Information for unigene UN27724

FASTA Sequence

Unigene ID: UN27724	Length: 1674	SSR
GAGTGAGACAGAAGACTTCTCAGCTGCTAAATCTCCCCTCAAGAGACTCGCCAGGCCAATTAGAGTCCAGTCCTTTGACTCAGCAA TACGGTTTCAAGAAAGGATCCAAAAGGGTTTGCCACCATCTTCTTTACACTTCTCAACACTCAGATCTTTCCACGCTTCTGGCGAG TACAGGAACATGGTGAGGGACCCTGTCTCTAACGTGATGAGGACTTACTCACAAATGTTACCACTGGAAGTACAGAAGCTGGATCT TATCGTTGGCTCAGCGCCTACATACATCTCCTCAGCTTCTCAGATGGCTGATGGGGCTAGGATGCTGATTCCTCAGCGTGGCCTAA ACGACATTGTGGTTCCTGTGTACGATGATGATCCCGCTAGTGTTGTCTCTTATGCTCTCAACTCCAAGGAGTACAAAGAGTGGGTT GTTAAGAGAGGCATCCCTAGGAGTAACAGAGAGTCTGAACCTTCTTCTACATTCTCTACTTGGCGTTCTCTAGGGTCTATGGATAC TGATTACATTCACCATGCTGTGTATGGATCTTCTCAAGATGATAAGAAGTCTCCTCATCTGACCATCTCTTTCAGCGACCGCTCTT CTTCCTCTGGTGCAACTGAGGGTAAAGTGAAGTTCTCTGTGACGTCTTACTTCGCAACGCAGTTTGACACTCTGAGGAAGACTTGC TGTCCGAGTGAAGTGGACTTTGTGAGGTCCTTGAGCCGGTGTCAGAGATGGTCTGCGCAGGGAGGGAAGAGTAATGTTTACTTTGC CAAGTCATTAGACGAGAGGTTCATCATAAAACAAGTTGTCAAGACCGAGCTGGATTCTTTTGAGGATTTTGCACCTGAGTACTTCA AGTACATGAAGGAGTCTCTCAGCTCCGGGAGCCCTACTTGTCTTGCTAAGATCCTTGGTATCTACCAGGTCTCTATTAAACACTCC AAAGGTGGTAAAGAAACTAAAATGGACTTGATGGTGATGGAGAATCTCTTCTACAACAGAAAGATCTTTAGGATCTATGATCTCAA GGGATCTGCACGGTCGAGATACAATCCAAACACATCTGGAAAAGACAAAGTTTTGCTAGACATGAACCTGCTTGAGACACTTCGGA CAGAACCTATATTCTTAGGAAGCAAGGCCAAGAGAAGCCTTGAAAGAGCTATATGGAATGACACAAACTTCTTAGCTTCTGTGGAT GTAATGGACTATTCATTGCTGGTTGGGTTTGATGAAGAGCGTAAAGAGCTTGTTCTTGGGATTATAGACTTCATGAGACAGTACAC ATGGGACAAGCACCTTGAGACTTGGGTTAAAGCTTCAGGCATTTTGGGTGGACCTAAGAACGCTTCTCCAACAATAGTCTCACCAA AGCAATACAAGAAAAGGTTTAGAAAGGCCATGACTACTTATTTTCTCACTGTTCCTGAGCAGTGGACCTCTTGAATTAAAGTGAAA GAATGAATCATTTTTCATCATTCTTTTGTTATTCAACAATAAAAAAAAGGGAATTGGTTTAACAGACTGATGCAACAACATATACA GGTTGGGACCTGACTGATTGATTTGATCTTTTATTTGTTTGTGTTTGATGTGTGTGTGTGTTAGCTTCTCTGAGTCTGGAGAATTG TATATTGTATTTATCGGCTAAACTTGTGCCCCCCAACTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_177257 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana]	2264	2e-252
AAL38344 unknown protein [Arabidopsis thaliana]	2264	2e-252
XP_002887343 predicted protein [Arabidopsis lyrata subsp. lyrata]	2259	6e-252
XP_002314813 predicted protein [Populus trichocarpa]	1816	1e-200
XP_002312432 predicted protein [Populus trichocarpa]	1405	6e-153

Swiss-Prot top hits (Blast detail)	Score	e value
P34756 1-phosphatidylinositol-3-phosphate 5-kinase FAB1	693	9e-072
Q9Y2I7 1-phosphatidylinositol-3-phosphate 5-kinase	677	7e-070
Q9Z1T6 1-phosphatidylinositol-3-phosphate 5-kinase	672	3e-069
O59722 1-phosphatidylinositol-3-phosphate 5-kinase fab1	665	2e-068
B0G126 1-phosphatidylinositol-3-phosphate 5-kinase	648	2e-066

TrEMBL top hits (Blast detail)	Score	e value
Q8VZ86 At1g71010	2264	1e-252
Q9SSJ8 F15H11.20 protein	2264	1e-252
B9HW75 Predicted protein (Fragment)	1816	9e-201
B9HJA2 Predicted protein	1405	4e-153
B8B0B9 Putative uncharacterized protein	1262	2e-136

Arabidopsis top hits (Blast detail)	Score	e value
AT1G71010.1 phosphatidylinositol-4-phosphate 5-kinase family protein	2286	2e-257
AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein	1229	6e-135
AT4G33240.1 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding	1120	2e-122
AT4G33240.2 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding	1120	2e-122
AT1G34260.1 phosphatidylinositol-4-phosphate 5-kinase family protein	844	3e-090

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			67%


8	1			33%

Unigene Members	Member information