Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN27729

FASTA Sequence
Unigene ID: UN27729Length: 936 SSR 
AGCTTATCTCACTTGTGGGAAAAGAATAAAACAATCATAAAAAGAATGTCTAGAATTACAAGACTACTTTTGTCTGGACCGACCAT
AGTACACAAACACATAATCAATGTGAAAGTAAAAGAAGAAGTTTGTTCAGGACGAATCTCATCCCCCATTTATGGAGTCATTTACA
GAATGTCAAAAGCAGAAAAAAAAACAACAAATGTACTTGAGATAAAAAAAAAAGACGAGAATTAAAAGACAATTAACCTTTGCAGA
AACGATTTATTCTTGTTTCCCTTTATGTACACACCCCACCCCACCAATACTTGCCTCCTTTTCTTTACACTGAAACACCACCTGAT
TCAACAACTCTACCTCTGTTCATGTCTGCATCTTTGTGTGCTCCTCCTCCTCCTCTCCCCTGATGTTTTCCTTGACGCTGCGACCA
ATACCCGTACGCCCTCAACACCCTGTCTAGCAGTTCTTGTGGCACAGGCTCTCCTCTTCGTTGCTGCGGCGATATACTCGCTGTGT
GAACCAGAGTCTTCCACTTATCCTTCAAGTCCACATAGGTTCTATGATCTGCACTCTCGAAAGCACGCAGTTTCACATCGCGCCAT
CTTCCAGTCCCCAGCTCTTCAACTGCTTGTACGAGAGCTTCCACCTCTGTCACTGAGAAGGGTCTCCTTGTTCTGCGCTGGGCGAG
CTCAGTACGCTTAGGTTTCTGGCTCAATGGAACTATGGCAAGCGCCTCAACTTCCAAGGCTGGAAGTGGAACAATCGCTCTTGTAT
CTGATGAAGGTTCTTCTTCACCAACAGTTATCTCCTTCTGATATGGAACTAACTCGAGGTGGTTATTATTGTCCACAACATCCGCC
TGAGGAGTTTCAGTATCTAGCGTGGGAGAAGCCGCAGACCGTTCAGACAAGTTTGTAGGGTCGATAGGCACAAGAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34614 unnamed protein product [Thellungiella halophila]7889e-082
BAB02267 H-protein promoter binding factor-1 [Arabidopsis thaliana]7843e-081
NP_187862 Telomere repeat-binding protein 3 [Arabidopsis thaliana]7843e-081
AAO61583 telomeric repeat-binding protein 3 [Arabidopsis thaliana]7791e-080
XP_002884911 hypothetical protein ARALYDRAFT_478612 [Arabidopsis lyrata subsp. lyrata]7753e-080

Swiss-Prot top hits (Blast detail)Scoree value
Q9C7B1 Telomere repeat-binding protein 37948e-084
Q9FFY9 Telomere repeat-binding protein 45762e-058
Q6R0E3 Telomere repeat-binding protein 54963e-049
Q9SNB9 Telomere repeat-binding protein 24506e-044
Q9LL45 Telomere-binding protein 14417e-043

TrEMBL top hits (Blast detail)Scoree value
Q1L0P9 At3g12560-like protein7375e-076
B5TFM5 Putative double-strand telomere binding protein 15906e-059
Q08707 BPF-1 protein5404e-053
Q9FNS1 MYB-like DNA-binding protein5404e-053
A0JBS3 Telomere binding protein5332e-052

Arabidopsis top hits (Blast detail)Scoree value
AT3G12560.1 TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding7956e-085
AT5G13820.1 TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding5761e-059
AT1G07540.1 TRFL2 (TRF-LIKE 2); DNA binding4963e-050
AT3G46590.1 TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding4506e-045
AT3G46590.2 TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding4506e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
81  33%

Unigene MembersMember information