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Information for unigene UN27740
| FASTA Sequence |
| Unigene ID: UN27740 | Length: 1039 |
SSR | | GCAACACCGATGGAACTTCACAGTAGTAAGAGTTACCAAGAAGTTCCAAATTCCCTTGAGCGGTCACGCACGCTTCCACCACCAAT
GGAACTTCATGGTGGGAGGAGTTGTTACCAAGAAGGAGCTATGGATGATACCCGGGTCGCTGCTAAGGATTCATCATCTCAAATTG
ACGCTTCGAGATTCGCTGCACAAAACGCGTATCCTTACTATATGCATGGGGTCATGAACCAAGTTATGATGCAATCAGCAGGCATG
ATGCCTCAGTATGGTCATCAACATCCTCATTGCCCACCTAATCATCTGAATGGAATGACAGGGTTTCCTTATTACCACCACCACCC
CATGAACACATCGTTACAGCACAGTCAGATGTCACAGAATGGTCAGGTGCCTTTACAGAATGGTCAGATGCCTATGGTCCATCATC
ATCATCATCATTCTTGGCCACAGACACAGATAGGAAACCACCCGTCTCCTAACGAGGTGAGAGTGACTAAACTTGACAGAAGAGAG
GAAGCTTTGCTTAAATTTAGACGTAAAAGGAACCAAAGGTGTTTTGATAAGAAGATTAGGTATGTGAATAGGAAGCGGCTTGCTGA
GAGGAGACCACGTGTTAAGGGTCAGTTTGTTAGGAAAATGAACGGCGTGAATGTTGACTTGAACGGGCAGCCTGAGCCTGACTTTG
CTGACTATGATGACGAGGAAGAGGAGGACGAAGAAGAAGAAGAGAATCGAGACTCGTCTCCTCAGGATGATGCTCTTGGAACTTGA
GAAAACATGGGAGAGAACTGAAAACCGTGTTTGGTTTTATATCTCGAGAATGATGCGCTGCTACAGCCAAAAACACTGGATATGTA
CTTCATTTGCAAGGGAAATAATGTGCTCAGCTTTGGCAGAGCATTGAAAATCACTATGTTTAGTTCGTTTATAAACATAAGATGTG
CTTGATCATGTTCAGTGAGTTATGTATAAACCCTTTTTTCTCCTTCCAGCAATTTTCTTGAATTTTATTTTTCATGTGTTCCCCGT
CTGTTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ADA58339 pseudo-response regulator 1a [Brassica rapa] | 1154 | 4e-124 |
| CAB75508 ABI3-interacting protein, AIP1 [Arabidopsis thaliana] | 900 | 1e-094 |
| NP_200946 two-component response regulator-like APRR1 [Arabidopsis thaliana] | 900 | 1e-094 |
| XP_002864730 hypothetical protein ARALYDRAFT_496297 [Arabidopsis lyrata subsp. lyrata] | 860 | 5e-090 |
| ADA58344 pseudo-response regulator 1b [Brassica rapa] | 451 | 1e-042 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LKL2 Two-component response regulator-like APRR1 | 900 | 5e-096 |
| Q689G9 Two-component response regulator-like PRR1 | 213 | 2e-016 |
| Q8L500 Two-component response regulator-like APRR9 | 178 | 3e-012 |
| Q689G6 Two-component response regulator-like PRR95 | 178 | 3e-012 |
| Q93WK5 Two-component response regulator-like APRR7 | 176 | 4e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| D2KK85 Pseudo-response regulator 1a | 1154 | 3e-124 |
| D2KK90 Pseudo-response regulator 1b | 451 | 9e-043 |
| Q56TL2 Timing of CAB expression 1 protein | 421 | 3e-039 |
| B9RLV6 Sensory transduction histidine kinase, putative | 362 | 2e-032 |
| B9N4C8 Pseudo response regulator | 361 | 2e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61380.1 TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator | 905 | 1e-097 |
| AT2G46790.2 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator | 178 | 2e-013 |
| AT2G46670.1 pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative | 178 | 2e-013 |
| AT2G46790.1 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator | 178 | 2e-013 |
| AT5G02810.1 PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator | 176 | 4e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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