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Information for unigene UN27808
| FASTA Sequence |
| Unigene ID: UN27808 | Length: 1898 |
SSR | | TGGTAATGGTAATGGTAATGATAATAAAGTGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATAAAGAACATATAAT
ATATTTTATACATTTTAATTAGTGTTTATAACATGGACGTATGATTTGTAAATCTCTTAGTACGGATATCCAAATTTAACAACTTT
CATTTTCGTCAAATGAGCACTCTAATTTTTGTTTTTCAACTTGGTAAAAGTTGTTATATCTCTTTTACAAAAAAAAAGTTGTTATA
TCCATATATAGGAATAACCATGCGCTAAAATTTAAACCACAAAGTTTTGTAGTATTTTTTGTCATTTCCAAATTGCATTTACTTAA
ATAACATTATAATCTTTGCTATATTTAAAAAAAGAATCCTTAACTTACCACTTCTTTTTCCATCAATCGCTTCTTGACCGGTTCAG
TCCAAAAAAAAAAGTCAACTACCTTCTTGATTTAAAGAGGCTTCTTAACTGTCCAATCGAGTATATCCAAACTGATTAATTGATCT
CCATAGGCTTTGACCACAATATGTTATACATAAATTGATATATAAAATTTACAAGTACAGAGAATATCAAATCCGATGTCGTCCAG
CGGTTAGGATATCTGGCTTTCACCCAGGAGACCCGGGTTCGATTCCCGGCATCGGAGCTTTTTGGTCTCTCAACCTTTTTGAACTC
TTTGGTCTTTTTAATCCAAAACAAGTCACAGCTTAGTAAGAAAGGGCTGCGAAGGCAAAAATCAATCCAGAGCCAATATGCATCTA
TTTATATTGCTCTTGTCTCAAAACAATAAGCTTACAGAAACAGAGTAAACAATGAACCACAAGTCAATAGGTTGTGTCCAGAAGTA
TAGAAAAAAATAAAAATAATCTAATTTACAAAAGACCTTCAAATATCAAAGTCAAACTCTCTCTGCAATATCATTTACATTCTTAG
CATTCCACCAAAACGTCCTTCCACCCCCAATCTTATTCGCATCAACATCTCTCCTCTCTGACTGAACTTCCTGCTGTTCAATCGAT
CCTGGATTCTCTGTCAAACACTGCTCCCAAAACACATCGTTAACCCCTGTCTTCGGAGCAGCAGCAATGGTAGTAACAGGCTCTGC
GTTCATATCAATCTTTGCTGACTTTGGTCTGTTATCCCCATTACTTAGACTCTCCGCAAAGCTGGTTGACTCGTTCACATCGATAT
CCATACTCTTATCACACGATTCCATGGCAAGATTCTCTAAGAACGTTAAAGAAGACTCCAACTTCTCCACCTGCTCAGCATGCGAC
CTGCTCGGAAGAAGAGAAGAAGTCGTCTCTTGCAGCTTTCTTTTCCTTCTCTCGTGGGTTTCTAGGTTTAGAGAAATCCCCGGTTT
CTCCAAAACCTGCGAAACGAACGTCACTATAGATCTCTGACGCTGCTCCATATGCTGCAACCGATCTTTCAGCGCTGTTACTTGCA
GCTCGAACCCTTTACGCTCGAGCTCTTGGCTCTGTAAATCCGCGAGAAGGACTTCTTTCTCCCTTTTCAGCCTCTCGATCTGATCC
TTCATGCTCTGTCTTTCTGAATCGGACAAAGGACTCTGCGCTTGTAGGTTCTGTAACGAGTGGCTGTGGACAGGTTTTCTCCTGTG
GATGTTCTTCATTAGGTAAGGCTGGCCTCTGACAAAGTCCTCGTTTGCGAACTCCCATTTCTCCGGATCGATTTTTCTGAAACCGT
ATGTGTTGAGCTGACGGATGAAGCTGGAGAAGTTCTTGTGTTTGAAGAACCTTGGAAGGAGGTCTTTTGAAAACTAGGCGGGGTTC
TTGACGATGAAGCTTTTGTTGTGATCGCTCCAGGATATGACTGAGTCGGAAGAGGAATCATCTACCATTTCGTATGTTTTGGTGAG
GAATGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34615 unnamed protein product [Thellungiella halophila] | 1373 | 4e-149 |
| XP_002865228 AT-HSFA4C [Arabidopsis lyrata subsp. lyrata] | 1281 | 2e-138 |
| NP_199383 heat stress transcription factor A-4c [Arabidopsis thaliana] | 1274 | 1e-137 |
| NP_974891 heat stress transcription factor A-4c [Arabidopsis thaliana] | 868 | 1e-090 |
| CBI30730 unnamed protein product [Vitis vinifera] | 807 | 2e-083 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FK72 Heat stress transcription factor A-4c | 1274 | 5e-139 |
| O49403 Heat stress transcription factor A-4a | 736 | 1e-076 |
| Q93VB5 Heat stress transcription factor A-4d | 561 | 2e-056 |
| Q94J16 Heat stress transcription factor A-4b | 541 | 5e-054 |
| Q6VBB2 Heat stress transcription factor A-2b | 488 | 6e-048 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3E8G3 Uncharacterized protein At5g45710.2 | 868 | 9e-091 |
| B9H2D8 Predicted protein | 721 | 1e-073 |
| B9S8F1 Heat shock factor protein, putative | 717 | 3e-073 |
| B9I1G8 Predicted protein | 708 | 3e-072 |
| Q940V6 Heat shock transcription factor | 671 | 6e-068 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G45710.1 RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor | 1274 | 4e-140 |
| AT5G45710.2 RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor | 868 | 5e-093 |
| AT4G18880.1 AT-HSFA4A; DNA binding / transcription factor | 736 | 1e-077 |
| AT4G13980.1 AT-HSFA5; DNA binding / transcription factor | 474 | 2e-047 |
| AT3G22830.1 AT-HSFA6B; DNA binding / transcription factor | 438 | 3e-043 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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