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Information for unigene UN27819

FASTA Sequence
Unigene ID: UN27819Length: 1190 SSR 
GGAGAAGAAGAAGAAGAAGATGAGTAGCGCTACACCAGCGCTTCCTACTTCACTCTTTACTAACGGGTCCCTCTCGTCTCCTCAGA
ATATCTCCAAGACTGAATTGAACAGCTTTGTGAAGGTTAGTGATCCTGCTATCTATAAATGGCGCCTCGTGATCGCATACGATGGC
ACCAAATTTGCAGGTTGGCAATATCAGGAATCACCTCCAACGATCCAATCAATGTTAGAGAAAGCCTTAACTCAGATAACAAAGCT
CCAAAGAAAACAGCTTCATCTTGTTGGTGCTGGTAGGACTGATGCAGGAGTTCACGCTTGGGGTCAGGTAGCTCATTTTGTCACTC
CTTTTAATTACACTAGCTTAGACAGCATTCACGCCGCTTTAAACGGTCTTCTTCCTCAAGATATCCGTGTCAGAGAGATCGGTGCA
GCGGTTCATGAGTTCCACGCTCGGTTCTCTTGCCGTAGCAAGGTTTACCGCTACCAGATATACAGCGACACTTTCATGGACCCCTT
CCAGCGTCATCTCGCTTACCACACTGCTTATAAACTGAATGCTTCTAAAATGAGGGAAGCTGCTCAACATTTTGTTGGCAAGCATG
ATTTCTCTGCGTTTGCTAACGCTACAAGGGAAGATGGAGCGCCTGATCCTCTCAAAACTATATCTCGTTTTGACGTCATTGAAATG
GGATCTCTTCTACAGCTTGAAGTTGAAGGCTCAGGGTTTATGTACAGACAAGTCAGAAACATGGTAGCTTTGCTGGTTCAGGTTGG
AAAAGAAGCATTGGATTCAGACATTGTCCCAATGATTCTAGAAACCAAAGACAGGAGAGAGCTTGCAAAGTATACATTGCCTGCAC
CACCTCATGGTCTTTGTCTCGTCTCTGTTAAGTATAAGGAAGATCATCTACAGCTTCCACCAGATTCTCCTTTGACTAGTTTTGGT
AGACATCATACTATAACAAAGTGTAAACTTCCCTTCTACTGAAAACTCTTCTGTTTAACATAGAAATTGAAAGAGTTTAAGTTTTT
TTTTTCTTTTTTTGAACATTAGTTAGTTATGTTATTGAAAACTAGATAACTCAACGCTTCAACAAACAGATCACATGATATAGAAT
TCGTTAGCTCCAACAAACAGATTGTTATAAGTTTTCACAACGCTGTAAATGTAAAGACAAGTGTTTAGTCCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882501 tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata]14691e-160
NP_187351 tRNA pseudouridine synthase A [Arabidopsis thaliana]14548e-159
BAF00823 putative tRNA pseudouridine synthase [Arabidopsis thaliana]14475e-158
AAF26999 putative tRNA pseudouridine synthase [Arabidopsis thaliana]13543e-147
XP_002275097 PREDICTED: hypothetical protein [Vitis vinifera]11251e-120

Swiss-Prot top hits (Blast detail)Scoree value
Q6MEE7 tRNA pseudouridine synthase A 14955e-049
P70973 tRNA pseudouridine synthase A4671e-045
A5VLH4 tRNA pseudouridine synthase A4633e-045
B2G8U7 tRNA pseudouridine synthase A4633e-045
A7Z0S0 tRNA pseudouridine synthase A4562e-044

TrEMBL top hits (Blast detail)Scoree value
A1A6J3 Pseudouridylate synthase14545e-159
Q0WPX6 Pseudouridylate synthase14474e-158
Q9M904 Pseudouridylate synthase13542e-147
B9S012 Pseudouridylate synthase10952e-117
Q1ZY14 Pseudouridylate synthase9412e-099

Arabidopsis top hits (Blast detail)Scoree value
AT3G06950.1 tRNA pseudouridine synthase family protein14552e-161
AT1G09800.1 tRNA pseudouridine synthase family protein1201e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  33%
 
62  67%

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