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Information for unigene UN27827
| FASTA Sequence |
| Unigene ID: UN27827 | Length: 1246 |
SSR | | CTTTAAAAGAAGGATAGTCTTATTAATTCTCTGCATGGAACCAGACAAGAGAACACATACTATTGTATATATATATAGTACAATAA
GAAAGGTGAGAGATGGGTCATGGGTCTTTAGATTCTCATAACATCAAGGTAAGCTTTTCCACCAAGCTCACGAGAGAACAAGCCTT
TGAAGTACTCATCAGTGGTCATGCTTCTGAAAAACGAAGCCTTATGCCTCTCCACGAGACTTCTCAGCGGACCAACTTCTTTGCCC
GTTCCCATATTGTGAAACGCCCCTATAGAAATCCTCTCCTTCTCTGAGTTCACAACCCCACGATGCTCTATACTTCGGTACGTCCC
ATTTGTAACAATCTCTATCATGTCTCCAACATTGACAACGAAAGCATTAGGGAGAGGTTTGACCGAAACCCACTTGCCGTTCTTCT
TGATTTGGAGACCTTCGACTTCATTAACCTGCAGAAGGATGGTGACTCCTGTAGAATCTGAATGTGGAGTCAGACCAATAACCTGG
TCGGGCTCTGGACAAGGAGGGTAGTAATTCATCCTCATTATCTGTCCTAAATCATCATCAAACAGCTTTTCCATCTCTTCAGGGTT
GATCTTCAGTCCTATCGCCATTTTAGCAAACAAGATCTTAGCTATGCTTTTAAGTTCAGCCGAATACGTCTCCAGTGTATCTCTAA
GGGGAAGAGGTATCTTCGGGAACACGTGAGGCTTGCGTAACCTAGCAGGTTGCACTGTGAGGTGGAACATGTCTGCCCAATCGAGT
TTCTGCTCTTCTGAAACCACAAAAGCCTGTCCAAACCCTTCCATGTCTCCAGGTTTTTGCCACAGCTTCTTCTTCTCTTCCACGGG
AAGGTTGAAGAAATCTTGAATCTCTGACTTGAATTTGTCCAAGAAGACTGAGTCCACTCCGTGGTTTACAAGCTGGAAAAATCCCC
ATTCTTTGCAAGCCAAGTCAAGATTTTCAATCTCAGAAACCATGGTGGTTGGAGAACATAAGCGGCTCATGTCAATGACTGGGATC
TCAGGTTTTAGACCAGAGTCACAGGACATCTCAGCTTTGTCTAGATCAGACCGTACATACCTCGCAGGAACCTTCTTGATCAGCTT
CTCCTTCACCATCCCTTGAACAGATGGAACTAAAATAGAGCTGTGATGCTTGCTTGCTACCTTGGCTTCCATGGCTGCTTCTTGGT
AAGAAAGAATAAGTTAACAGTGCCAAATCTAATGATTGGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869680 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 1505 | 1e-164 |
| NP_194260 protein SRG1 [Arabidopsis thaliana] | 1463 | 8e-160 |
| BAE99802 SRG1-like protein [Arabidopsis thaliana] | 1462 | 1e-159 |
| NP_194261 protein SRG1 [Arabidopsis thaliana] | 1426 | 2e-155 |
| NP_173145 protein SRG1 [Arabidopsis thaliana] | 1381 | 2e-150 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39224 Protein SRG1 | 1381 | 1e-151 |
| A2A1A0 S-norcoclaurine synthase 1 | 712 | 4e-074 |
| Q00985 1-aminocyclopropane-1-carboxylate oxidase 1 | 417 | 6e-040 |
| O48882 1-aminocyclopropane-1-carboxylate oxidase 2 | 406 | 1e-038 |
| A2Z1W9 1-aminocyclopropane-1-carboxylate oxidase 1 | 402 | 4e-038 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SB33 SRG1-like protein | 1463 | 5e-160 |
| Q0WSU6 SRG1-like protein | 1462 | 7e-160 |
| Q9SB32 At4g25310 | 1426 | 1e-155 |
| Q8GXN0 SRG1 like protein | 1291 | 5e-140 |
| Q9SYM7 Putative flavanone 3-hydroxylase | 1165 | 2e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G25300.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1464 | 2e-162 |
| AT4G25310.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1427 | 4e-158 |
| AT1G17020.1 SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and inc | 1382 | 7e-153 |
| AT1G17010.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1305 | 6e-144 |
| AT1G78550.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1166 | 8e-128 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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