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Information for unigene UN27847
| FASTA Sequence |
| Unigene ID: UN27847 | Length: 1352 |
SSR | | GGTGTCGTAGGGGAGGGATTGACCTTTCTAACGCATATTCAGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATC
AAGCAACGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTTCCTTTTTGATAACA
AGGCAGAAACCTCCGACCCGACATTCAAAAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCAGCAAGCACCTACTCAATTCTAA
ATAAAAAAGCGTGACTTTACTAAACAAGCAAGAAAAGCCCTTTCGCACTTCTTAGTAAAGCCTAAGCGCCCTTGTTGCTAAAGGTA
AGGCCGGCTTTCTTCGCATGCTTGAGCGCATTACGCATTAATAAAATATATATATATAAACCTTTCCTTGAGTTTTCAATAAGGGG
CATCTATAGTAAGGGACCTTTTCAATAAGACTCGCGCTAGGCGATCACGTTTTTTGTCTTCCCAAAAATCGAATATTTTTGAGTTG
GTAAAGACCCACCCCTAGTTTCAGTCAGAATGAGTCCCCGGGACCCCGGGACATTGGCTTCCGCCAACAGTGGACTATTAAGGATC
GCATCCCGCGCATATTCTACATTATAGCCTGCAACTAATTCAGCTTCCGCTTCTGGGAGATCAAACGGAGCTCGATTAGTTTCTGC
TAGACAAGAAATAAAGAACATAACCAATACAGGGAACAGGGGAATACCAGACCATATCTGCTTTTGCGCCATGACAATCTCACTCA
AATTACAAGAACCTACACATATTAGTACAGTAATAAGAATAAGACCAATAGAGACTTCATAAGAGACCATTTGAGCTGCAGATCGT
AATGCTCCTAGAAAGGCATATTTCGAATATAGAGGAGTTCAAGTTACCAACAATCAACGAGTTGATCATACGCTTCTATGAACCGT
ACGAGCACGTCCTCTCTCACACCCCACCGCGCTTACGGCTCTATACCCCAACCCTACTTGCTCTGGACCCCCCCGGTCCTCCCTTT
CTATTCCTCGGTAAGCGGGCCGTGGGAGCATGGCGGGGGGCGCTATCCCCTTTTGACTGATAGAAAGCATCTCTCTTTTGTCTCTC
CTGACCGAACCCGCCAAAAAAATCACAAAAAATCACAATAGAATAAGTTGTTCTTGCCGGGAGAGTAGCGTCTGAGACATCTTTAT
CTGAGGCGTTCCTCGGCTTCGTCGTCCGGCTCATCCTCGGAATCCGAAAATCAAACTGAGACAGAACGGATTGTTTCAGTGACATA
TCTAATCAGACTGAATAGGATTTGAAGAGCTGTCACCATCATTCAATTCACATCAATTTAAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAA27743 URF-1 [Citrullus lanatus] | 520 | 2e-050 |
| YP_717140 hypothetical protein BrnapMp043 [Brassica napus] | 519 | 3e-050 |
| P08834 RecName: Full=NADH-ubiquinone oxidoreductase chain 1; AltName: Full=NADH dehydrogenase subunit 1 | 512 | 2e-049 |
| YP_173402 hypothetical protein NitaMp056 [Nicotiana tabacum] | 496 | 1e-047 |
| ABZ79354 NADH dehydrogenase subunit 1 [Bambusa oldhamii] | 465 | 5e-044 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P08834 NADH-ubiquinone oxidoreductase chain 1 | 512 | 7e-051 |
| P92558 NADH-ubiquinone oxidoreductase chain 1 | 464 | 3e-045 |
| P31839 NADH-ubiquinone oxidoreductase chain 1 | 464 | 3e-045 |
| Q01148 NADH-ubiquinone oxidoreductase chain 1 | 457 | 2e-044 |
| Q01300 NADH-ubiquinone oxidoreductase chain 1 | 424 | 1e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6YSP9 Putative uncharacterized protein orf100b | 519 | 2e-050 |
| Q5MA12 NADH-ubiquinone oxidoreductase chain 1 | 496 | 8e-048 |
| B1A0V1 NADH-ubiquinone oxidoreductase chain 1 (Fragment) | 465 | 3e-044 |
| B4XAP3 NADH-ubiquinone oxidoreductase chain 1 (Fragment) | 465 | 3e-044 |
| B5TM92 NADH-ubiquinone oxidoreductase chain 1 | 464 | 4e-044 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| ATMG01120.1 Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C. | 411 | 3e-040 |
| ATMG00516.1 Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C. | 411 | 3e-040 |
| ATMG01275.1 Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C. | 411 | 3e-040 |
| ATMG01130.1 hypothetical protein | 204 | 3e-016 |
| ATCG01100.1 NADH dehydrogenase ND1 | 194 | 5e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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