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Information for unigene UN27872

FASTA Sequence
Unigene ID: UN27872Length: 1158 SSR 
GAAATGGATAAGAAAAGATTCAATTTAACATCATCGACGACTGACAAAGTATGTACATCTTTCAGACAATTCTATCTAAACTAACA
GAAGTAAAACACATGGTGAATAAGATTCGATAAGATTACGCCACGTGTCACGGGAACTTAAATCAACCGTCGACAAAGCCTTGTTG
ACTTTTATCAATCCTGTAATAAAATTGTAGTTACAATAACTCACCTAGTCTCTTCTCCTCCTCCACGCTCGATATCCGACTCGGTC
ATCGCTATCCGGCAGTTAGACGACGGAGATTGAGCCGGAGCTCCGGCTACAGGCGACGAGGCGTTACCTCTGCTCAACATCCGAGT
GAAAGATAACATCCGACTCATCGGCGACCTAAACGAGTGACTCGCCGGCGAGTTCCGACTCAAATCGTCTTCGAACTCGCTCAAGT
TCCTCCTCGGCACCTCAATCGCCGCCGGTTTCCTCATCAAATCTTCCGACGGCATCACAGAACCACTAGGAGGCTCGTCTCTCAAT
CCGGAACTCGAACCCGGTTCAATCGCGGAAACCGGTTCAGGAGAAATCGTGATTACGACTTGCTCCTCCTCCACCGTCGCAGTTAC
CTCAGGTTTGACGAGAGAGCGGCAGAGAGGACACGTGGAGTGAGAATGAAACCACATATCTATACAGTCCACGTGGAAAGTATGCT
TGCAGCCGGGCAAAACCCGACCCGACTCGCCTTCCTCGAACTCGGAGAGGCAGACCGCGCACTCGGTCAACAGATCCTTGTGAGTT
GACTCGGAGAAAGCGAAAACGGGGAGAGACTTGATCACCGCCGGATCGAGTCCGCGCGAGGCGGCGACGACGGTGGAGGGATCCGC
GGCGGCGAAGAAAACGATCGTGGAGCGACGGTTACGGCTGCGGCGGCGGAAATGGCGGCGGCGAGCGCGGAGGAGGTACCAGCGGG
CGTAGAGGTGGAGGAAGACCATTAGGATGACGACGAAGAAGAGGATGACGATGGCGCTGAGCATGATCTTGCCGCTCATGGCGTAG
GTTCGAGAAGTTCCCGAGGTTGTGGTGGTTTCGTCGGGTCTGCCCATTGGATATTGGTCGTTGGAGTTCATGAGAGATTGAGAGAG
AGAGAGAGAGAGTCAAGTGGTGAAAGGAAGAAGAAAATGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883022 hypothetical protein ARALYDRAFT_479140 [Arabidopsis lyrata subsp. lyrata]10668e-114
AAM65773 putative RING zinc finger protein [Arabidopsis thaliana]10434e-111
NP_188294 RING-H2 finger protein ATL2 [Arabidopsis thaliana]10353e-110
AAC77829 putative zinc finger protein [Arabidopsis thaliana]10291e-109
XP_002328624 predicted protein [Populus trichocarpa]6322e-063

Swiss-Prot top hits (Blast detail)Scoree value
Q8L9T5 RING-H2 finger protein ATL3F10351e-111
Q9LZJ6 RING-H2 finger protein ATL3L4274e-041
Q8LF65 RING-H2 finger protein ATL4G3763e-035
O22255 RING-H2 finger protein ATL2N3513e-032
O64763 RING-H2 finger protein ATL2G2643e-022

TrEMBL top hits (Blast detail)Scoree value
Q4FE42 At3g1672010352e-110
B9HXR4 Predicted protein (Fragment)6364e-064
B9N029 Predicted protein6321e-063
B9RT88 Ring finger protein, putative6222e-062
Q5ICP0 RING-H2 subgroup RHE protein6042e-060

Arabidopsis top hits (Blast detail)Scoree value
AT3G16720.1 ATL2; protein binding / zinc ion binding10369e-113
AT3G62690.1 ATL5 (ATL5); protein binding / zinc ion binding4274e-042
AT4G15975.1 protein binding / zinc ion binding3924e-038
AT2G47560.1 zinc finger (C3HC4-type RING finger) family protein3512e-033
AT2G35000.1 zinc finger (C3HC4-type RING finger) family protein2643e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  40%
 
191  20%
 
201  20%
 
81  20%

Unigene MembersMember information