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Information for unigene UN27896
| FASTA Sequence |
| Unigene ID: UN27896 | Length: 1153 |
SSR | | CGTCCATGGCTACATTGCACGAGAGAATGGTCCCGAAACTCGAGAAGGTGTCGTACAGGGCTTTGTTGTCGATGGTCCCGTCCAGG
TTTTTGATGAAAACATTGCCTTTCCCGCTCAGTCTCGTGCTCGGGTCACGGTTCGAACGCATGATCCTTATGGGTCTCTCTCTGAT
CGGAGTGTAGTTCAGAATATCCATTGCTCGCATGGCATCATCGGGATTGGCGAAGTTGACGTAAGCGTATCCAAGAGAACGACGAG
TCAAGTCGCGACACACCCTAACTGTCTGGACAGGAGCCACTTGGTTGAACAGATCCAACAGATGTGCCTCGTTGACACTTTGGTCC
AAATCTCCGACGTAGAGGGAGGAGTTAGGGTGCGTTTGTAACGCCTCGGCCGCCGCAGCCGCGACGGCAGCTACCTGAGTCGCGTG
AGGAGAGGCGACCGTAGACGCTGGTTGATTGGGGACTTGATCAACCATCGCTGTCGTCGGGGCAATTCCAGATGCAACCGCCGCCG
CCATGTAGTTTAGGGTTTTTTTCGTGTGTGTCTGTGTGTGTGTGCGAGACAGCGAGAGAGATTGTGTTTGTGTGTTTTACGATCTT
TTAAATCTTTCTTGAGAATATTTTGCGAGATTTTTATTTATTTGATATTTTGATTTTGATTTTTTTCCTTTTTTGATATCTTCGGA
GAAACGATCCGAGTGTGGAAGATGTGCTGTTGTGTATTTATACATTCGGCTAACTAACGAATCGGTCCGTACGAATCTGAGTTCGA
ACTGATGTGTCTCTTCGGTTTTGACCGAGTTTTACGTGGGCCCATTAAGCTTAACAAATAACGTACAACGTGGTGCCACGTGTCCT
TCTTTGGTCTTTTGATATGTTTTTCACTCCATTCTTTTTGTCGCCTTTTATTGTGCATCTTCAAGAGTAACGTGGATAATTAATTT
GACTAGATCTCTAATTATATCCTCTACTTTTGCGTTTCTTATGATTTGACCACTTTACATGCGGGGAAGTACTGAAACTTAGGTCA
AAATCTTATAATAATTGGTAAAACATGAATTGTACTAGTCTTTTGTGTTCAAAATATTAAAGAAAATATTAAAGAGATAAAGCAAT
GAGAAACTATAAAATATTAATGAGAAACATATATA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888846 hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp. lyrata] | 724 | 3e-074 |
| NP_177322 Polyadenylate-binding protein 5 [Arabidopsis thaliana] | 713 | 6e-073 |
| AAF43230 Identical to the polyadenylate-binding protein 5 (PAB5) from Arabidopsis thaliana gb|M97657 | 649 | 2e-065 |
| AAA32832 poly(A)-binding protein [Arabidopsis thaliana] | 649 | 2e-065 |
| XP_002890531 PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata] | 582 | 1e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q05196 Polyadenylate-binding protein 5 | 649 | 7e-067 |
| O64380 Polyadenylate-binding protein 3 | 569 | 1e-057 |
| P42731 Polyadenylate-binding protein 2 | 432 | 1e-041 |
| P31209 Polyadenylate-binding protein, cytoplasmic and nuclear | 430 | 2e-041 |
| Q6CDH3 Polyadenylate-binding protein, cytoplasmic and nuclear | 422 | 2e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2YYH2 Putative uncharacterized protein | 454 | 5e-043 |
| Q6YYV1 Os09g0115400 protein | 454 | 5e-043 |
| A2YTU1 Putative uncharacterized protein | 450 | 1e-042 |
| C8TFM3 Putative poly(A)-binding protein | 450 | 1e-042 |
| Q6UUN6 Putative poly(A)-binding protein | 450 | 1e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G71770.1 PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor | 649 | 6e-068 |
| AT1G22760.1 PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor | 569 | 1e-058 |
| AT4G34110.1 PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor | 432 | 9e-043 |
| AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | 400 | 5e-039 |
| AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | 336 | 1e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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