RadishBase

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Information for unigene UN27903

FASTA Sequence

Unigene ID: UN27903	Length: 1001	SSR
AGAAAGGGAAAGTTCTCTACATTGGTTGCTACAAACGTCGCCGCTCGTGGTCTAGATATCAACGACGTGCAGCTAATCATCCAGTG TGAGCCTCCACGTGATGTTGAAGACTATATCCACCGTTCAGGCAGAACAGGAAGAGCAGGCAACACTGGAGTCGCGGTCATGCTAT ACGACTCTAGAAAGTCTGGAGTGTCCAGGATCGAAAAGCAGGCTGGAATCAAATTCGAGCACGTTTCTGCACCGCAGCCTAACGAT ATCGCCAGAGCTGTTGGCATGGAAGCAGCCCAAGATCACGCAGGTCTGTGACAGTGTGGTTCCTGCTTTTATGGCTGCGGCCAAGG AGCTCTTGGAAAGCTCCGGTGTGTCAGCTGAAGTCCTCCTCGCTAAAGCACTTGCAAAAACCGCGGGCTTCACTGAGATAAAGAAA AGGTCGCTTTTAACATCGATGGAGAATCATGTCACGTTGCTTTTTGAAGCAGGGAAACCTATTTACACTCCATCATTTGTATGTGG TGTACTGAAGAGAATCTTACCGGACGACAAGGCTAATTCGATCGAAGGGTTGACTCTAACAGCAGATGGACAAGCTGCTGTGTTCG ATGTTGCACAGTCGGATGTAGACCAGTTCGTTGCAGCTGCGCGGAAGAATGCGAGTGTGAGCTTGGAGGTTGTCAAGGAGTTGCCT AAGCTTCAAGAGAGGGAGCCTGCGCAGAGAAGATTTGGCCGCCCAGGTGGTGGTGGCCAAGGGTTTAATAACCGTGGCAGAGGAGG TAGTAGATTTGGTCGTGGTGGTGGTCGTGGTGGTGGTGGTGGAGGCCAGAGATGGTGAAAAACTTCTTAACACAACAACACCTAGT CAAAAACTCTTTTACAATTTCTACTTTATAATAGTGTTTTATGTGTGTTATTATGAACAACTTAAGAGGGAAGCAAGCGTTCTTGT GTGTGTTTCCTTTCAGTTTTGTGTAATTTTGATGACAATGATGATACAATTTCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_201025 DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]	623	1e-062
CAA68194 RNA helicase [Arabidopsis thaliana]	623	1e-062
AAK62631 AT5g62190/mmi9_10 [Arabidopsis thaliana]	623	1e-062
XP_002866477 hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp. lyrata]	604	2e-060
XP_002269873 PREDICTED: hypothetical protein [Vitis vinifera]	551	3e-054

Swiss-Prot top hits (Blast detail)	Score	e value
Q39189 DEAD-box ATP-dependent RNA helicase 7	623	6e-064
Q41382 DEAD-box ATP-dependent RNA helicase 7	457	1e-044
Q650T9 DEAD-box ATP-dependent RNA helicase 7	445	3e-043
Q99MJ9 ATP-dependent RNA helicase DDX50	275	1e-023
Q9BQ39 ATP-dependent RNA helicase DDX50	274	2e-023

TrEMBL top hits (Blast detail)	Score	e value
B9R9L5 Dead box ATP-dependent RNA helicase, putative	550	3e-054
B9I4I4 Predicted protein	530	6e-052
B9ICY7 Predicted protein	516	2e-050
Q9M6R6 RNA helicase	515	3e-050
A6MCY9 DEAD/DEAH box helicase family protein	454	4e-043

Arabidopsis top hits (Blast detail)	Score	e value
AT5G62190.1 PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding	623	6e-065
AT5G26742.1 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding	219	4e-018
AT5G26742.2 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding	219	4e-018
AT3G22330.1 PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	191	7e-015
AT3G22310.1 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding	191	7e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			100%

Unigene Members	Member information