Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN27955

FASTA Sequence
Unigene ID: UN27955Length: 1066 SSR 
TGTAATTTTATTTCACAACGAATTATCGATGTAATCAATACGACGAGAGATGAAATAGTATTCCAAGGGTTCCTAATTACATCAGT
ACAGAAGTTGGTTCTTACAACAACTGCAAAACCAAAGCTAACTAGCTTATTTATTCGGTGTATAAAATATAAGTTGTCAGAACCCA
ATATCTTACCTTTGTTTTCACCATCTCACTGAGTCATGTTCAATGGTTTGTTATACGGGTTCTTATAGATATATATATATATATAG
TCTTTGGTAATGTAGAAGAAGCTACCTATTGTTAGCTAACTCAAGATCGTAACCCCGGGAAGAAACTCCAGCTGTTTCCCGCGACT
TTCTCACTATTCTCCTCTTTAGTGTTATCAAATTTGAATTCTTTGCTAGATCCAACAGAGGAGGAACTGAGCTGATGGATCCTCTG
CTGTTCGGTCTCTCTATCTACCGACAATCTCTCTATGCTTCTCCTCTCATCTTTCTCAATCCGGTCGTTGTTGTTCATTCTGTCAT
GTGATCTGTTCAGCTTGGTCGCAAGACAGCGTGCAACGTCTTCGCCGGTTAACTCAAACGAGACTCTGTGATCCGCTACGATGACT
TCAGAGCCATGATCCGAATTAGGCAGAGACTCGACCTCAGAGATGTGTGGCCACGCAGTGTTGTTTCCAGAGACCATCCCTGGACC
ATTTGGTGTCAATGCGCCTGAACCCATCCCTGAACCGTGGCCAACAGGAGTGATTGAGCCAGAACCGAACCTCGATCCCCATTTAC
GAGCAGTGAAATGCTCAAAACCAAGGAACTTCAGGTACAAGAGCGGCGTTACCGATCCGTGTGTTGTTCTTTTGAGATCCGAAACA
GGAGTTTAAGCTCCAACAGTTTCCCCACCTTCTCTTCTGCACAGACGAAGGCTGAACACGAGACTCGGCGGTGACGATGGCAGTAG
CGGCGGCGTTCACAGTCTCAACGCTGTTTCTCATCTTCGACTCAGATCCACCCACAATAACCTTAAGATTTAGTACTACTACTTGG
ATCTCGAAAGAAAAATTAAACTAAAAAGAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_200056 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]7271e-074
XP_002865912 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]7262e-074
XP_002867602 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]4197e-039
NP_194292 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]2664e-021
XP_002272322 PREDICTED: hypothetical protein [Vitis vinifera]2208e-016

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9FHB7 At5g524307279e-075
O65600 Putative uncharacterized protein AT4g256202923e-024
Q8GYX5 At4g256202663e-021
B9RIV6 Putative uncharacterized protein2125e-015
B7FHE7 Putative uncharacterized protein (Fragment)2044e-014

Arabidopsis top hits (Blast detail)Scoree value
AT5G52430.1 hydroxyproline-rich glycoprotein family protein7284e-077
AT4G25620.1 hydroxyproline-rich glycoprotein family protein2921e-026
AT1G63720.1 EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 406 Blast hits to 313 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 81; Plants - 111; Viruses - 14; Other Eukaryotes - 75 (source: NCBI BLink).1513e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  100%

Unigene MembersMember information