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Information for unigene UN27956

FASTA Sequence
Unigene ID: UN27956Length: 1066 SSR 
GGATTTAGAATTGAGATCCGACCCCAAAGGTTTCTTTCTTTTTAGCAATACACAAAAGCTATGCTCATCTTAAAAAGGGTCTCTTC
TTCTTCGGTTATACTTCTCAGATCTCCATCTCTCTCTCTCCCCTTTCACGGATCCTCTGTTTTGGTAGAAGATGGGTGTTGAGGTT
GTAACTTCCGGTGGATTCGAGGTTGCTCCGGCTCCTTTCGAGGGAAAGCCTGAGACGAACGGGAAGGTGGAAAAGGTCTCCTTCAA
GTTTGGTTCACACGGTGAGCCGCCAAAGAAGGCTGAAGAGACTAGTAGTAGTACTAGTACTAGTAGCAACAAGATCATCTCCTCTG
ATGTACCGAAAGATGCAGCAGAAGAGTGGCCTGCTGCTAAGCAGATCCGCTCCTTCTACTTTGTCAAGTACCGTCACTTCGACGAC
CCCAAGATCAAGGCTAAGCTTGAGGTGGCTGATAAGGAGTTTGAGAAGCTGAAAAAGGCTCGAAGTGCAGTCATTGAAGACTTGAA
AGCTAAGAAGGCGGAGAGATCCAAGTTGTTTGACATGTTGGACCCGTTGAAGTCAGAGCGTCAAAGGTTCAACAACAAGTTCGATG
AAAAACGAAAAGAGATGGAACCGTTGCAGCAAGCACTTGGGAAGCTAAGAGGCAATGATGGTGGGAGTTCCCGTGGGCCTGTTATC
TGTTCTTCCCAGGAAGAGCTCAACAGTATGATATACAGCTACGAGTACAGGATTCAACACGAGAGCATTCCGTTGACAGAGGAGAA
GAAGATTCTTAAAGAGATCAGGCTGCTTGAAGGGACAAGAGATAAGGTCATTGCTAATGAGGCTGTGAGAGCCAAGATCAAAGAAG
CTATGGGTCATAAAGATGATATCCAAGATCAATTTAAGGTAATAAGAGAAGTCATGGGATTGGAGTGGGAGTACTACTCTTGGCTT
ATCTTGTTAGTTTCATATGTGATGCTTCAATACTATTAAAGTTGCAGTATGACCAGTTGATAAAAGGTTGTGTCCAACTATTATTA
TTCTCTTTATATAAAGGTATCTAATTTTATTTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869559 hypothetical protein ARALYDRAFT_328945 [Arabidopsis lyrata subsp. lyrata]9709e-103
NP_194480 proton pump interactor 1 [Arabidopsis thaliana]9322e-098
BAH19433 AT4G27500 [Arabidopsis thaliana]9322e-098
CAB43882 proton pump interactor [Arabidopsis thaliana]6662e-067
XP_002316898 predicted protein [Populus trichocarpa]6123e-061

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
B9DFB6 AT4G27500 protein (Fragment)9322e-098
O23144 AT4g27500/F27G19_1009322e-098
Q9SZS5 Proton pump interactor6661e-067
B9HZV0 Predicted protein6122e-061
A5C436 Putative uncharacterized protein5971e-059

Arabidopsis top hits (Blast detail)Scoree value
AT4G27500.1 PPI1 (PROTON PUMP INTERACTOR 1); protein binding9435e-102
AT3G15340.1 PPI2 (proton pump interactor 2); protein binding2383e-020
AT5G36780.1 AT5G36780 and AT5G36690 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.2042e-016
AT5G36690.1 AT5G36690 and AT5G36780 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.2042e-016
AT1G53110.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: PPI2 (proton pump interactor 2); protein binding (TAIR:AT3G15340.2); Has 9097 Blast hits to 6362 proteins in 564 species: Archae - 111; Bacteria - 824; Metazoa - 3326; Fungi - 733; Plants - 436; Viruses - 39; Other Eukaryotes - 3628 (source: NCBI BLink).1227e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  100%

Unigene MembersMember information