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Information for unigene UN27964

FASTA Sequence
Unigene ID: UN27964Length: 1321 SSR 
ACTGACCATAAAAAAAAAATATAAGTGAAAAAGTTACACTGACACCAAAAAGAAATAAAAGAAAATCTCAATAGGTTACACTTAGG
ATTGCACTTCTGCTTTGGCTTATTTTTCCCATTGTACAAAATGCTCTTTTCTACAAATAACATAAATAAACACATTGTTACATCTT
TCATCAGGTCAACTTAACCTCAACTAACTCCCTCCGAGGTGGTGTGGCCTTAGACAAACTCTAACCTCGTGTTCTTCCTCCACTCC
TCCCTTCAATTTCGGCACCAGGATCTCAAGAACCGGTCATGTCCCATCAAAATATGCTTCGATGTTGGCTTCTTCCGGTATCCTAT
TTGGCAACTGTATCTCCCTCATGAACTCCCCCGGAGGACAATGCTCAGCCGTCTGATCAACAACCAGCTTGAAAGTACGCTCCCTC
CGCTTCACCAAGGGAGTCCTCGACGTGCTTGACCCCGTGACCTTCACAATTCCGTTCGTTATACCGTTCCTCCATGAGACCTTCAC
GCTGTTCAAGTCCACAAACGGTAAAATTACCACGACCAGGTAAGCTTCTTCGTCTTCGTAGATGGTTTTGGCAGCAGTGGCGGGCC
CGTGAACGTTCTTCATCACTCCAGTGAAGTCGTTAGCCCAACCGGTCGGGTCCTTGGCATGGTTGTTAACAACAGTCAAGCAACAT
TCTTCTTCGCTGCTTCCAGGAGATAAGAACTCTTTCCTCTTCTTATTATTGCTCCCTCCTCCTGCTCCTGGAGATTGATCTGATGA
GTCACCATTGCTGCTGAAAGAAGCGTTGCTTGTCAAATGCAATCCCGAACCGTTAAGGATCTTCTTAGCGCAATTCAAACCCTGTT
TTGTAACATGAGGCAGCTCGAAGTCCGTGTTGGGAAGGTTTCTCCACGAGCCGAAGTCACTAGCATCAGGAGGGATAGTGAACTTC
AAATCTCGACCCGTCAGCTCAAACCACCTCTTCTTATCTTCCTCGCTGACGCACAAGAGACTCGGCGAGGCCACGAACTCGATCCC
GTGAAGACACTGAGGGTTAGAGAGTCCCCTGTAATGCTTCCTCTGCATCCTGTGAGACCTAACAAACCCTCTCTCCGCGCTGAAGG
GAAACGGACGCTCGCCTTGGCGAGAATGCCCGTTCATATAGCTCCTCAGCTGCATTTTCCCGAGGGCGTTCTCGGGCTTATCCTTG
AAAGCCCACATGTACATGTTCTCCATATCATGCTGAACAAGAAACACATCGAGCTTGAGATCAGATTTATCAAAACCACTAAAACA
CCCTCCTCCTCCTCCTACTCCGTTAGCAGTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB85985 putative protein [Arabidopsis thaliana]17031e-187
NP_568100 HSP20-like chaperone [Arabidopsis thaliana]17031e-187
XP_002870975 hypothetical protein ARALYDRAFT_908113 [Arabidopsis lyrata subsp. lyrata]16895e-186
NP_565864 protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana]13373e-145
XP_002881516 sodium-and lithium-tolerant 1 [Arabidopsis lyrata subsp. lyrata]13241e-143

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5N0 AT5g02480/T22P11_7017039e-188
Q9LZ54 Putative uncharacterized protein T22P11_7017039e-188
O80926 Expressed protein13372e-145
B9SP16 Putative uncharacterized protein12432e-134
Q9FQY3 SLT1 protein12243e-132

Arabidopsis top hits (Blast detail)Scoree value
AT5G02480.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 60 Blast hits to 60 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).17035e-190
AT2G37570.1 SLT1 (sodium- and lithium-tolerant 1)13381e-147
AT2G37570.2 SLT1 (sodium- and lithium-tolerant 1)12456e-137
AT3G12570.1 FYD10951e-119
AT3G12570.3 FYD10951e-119

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
91  33%

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