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Information for unigene UN27990

FASTA Sequence
Unigene ID: UN27990Length: 789 SSR 
GGCTTAAGAAACATTGATGAATTCGATTTGAAGCAAAATGTCATTGTGTTAACAAAGTCAATTGCAACATTTAAAGAAACTAAACC
GAGGCTAAGATCCAAAACGTGACATGAGAAGAAAGGGCAATCTGAACCCGAGTAACGAAAGAAAGCGCCACAGCGACTTCATACCT
AAGACATGAAAGCTGGGTGTGTACATCACAATACTTGAGATCTTTGGCGTATAAGACCACAACTCCTGCCGATGAACACGCAGCTG
CAAGAGATAACATTGCAGTCACCCAATCACCAACGACGAATAAGCTGACCAAGATTGGGTTTTGGAGATCTTTCTTGGTCCTCAGA
GCATAAACATCAAGACACGCGAGGGCAAAGCTCCACAGCAATTGAAGACCCATCGAAGCAATCAAGTAGCAGAAAGCAGTGCGACC
AGAGAAGTCGGTGGCAGAGACCATAAAGCCGATGGAAGCAGCAGAAGAAGCACATTGTCCGATTCTCAGTAGCAGACCACACACAG
TTCCTGGACCTACGAAGATCTTCTTCATCTCCCCCAAAATGTTACAAAATTGCAATAAAATCAAGCGAGAAAAGAGGAACAAAAAA
AAACCCTAGTTTTCGCGAATTAAAAGATACATTTTGGCGGGGAAGAAGAAGAGATGCAGAGGAGCTTCATAGCTAAATAAGAACCC
TAGAAGAAGAAGAAGATGATTGACACCACCACCTACTACATAAGAGTTTCCTAAATTGCGATAGATTCCTTATTATAAAGGCTTCT
TCGAGTGGACTCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877943 hypothetical protein ARALYDRAFT_485778 [Arabidopsis lyrata subsp. lyrata]6741e-068
NP_566990 uncharacterized protein [Arabidopsis thaliana]6686e-068
XP_002309085 predicted protein [Populus trichocarpa]6004e-060
XP_002529873 conserved hypothetical protein [Ricinus communis]5682e-056
XP_002272505 PREDICTED: hypothetical protein [Vitis vinifera]5583e-055

Swiss-Prot top hits (Blast detail)Scoree value
Q945M8 UPF0497 membrane protein At3g538506683e-069
Q9LZM5 UPF0497 membrane protein At5g020605161e-051
Q8L7R5 UPF0497 membrane protein At3g232004075e-039
Q9SKN3 UPF0497 membrane protein At2g283703279e-030
Q6NPF8 UPF0497 membrane protein At2g372002821e-024

TrEMBL top hits (Blast detail)Scoree value
B9HC42 Predicted protein6003e-060
B9SV54 Putative uncharacterized protein5682e-056
C6SYC7 Putative uncharacterized protein5582e-055
B9HT63 Predicted protein5125e-050
B6T990 Putative uncharacterized protein4793e-046

Arabidopsis top hits (Blast detail)Scoree value
AT3G53850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G02060.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6692e-070
AT5G02060.1 integral membrane protein, putative5161e-052
AT3G23200.1 unknown protein4112e-040
AT2G28370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3313e-031
AT2G37200.1 integral membrane protein, putative2848e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  100%

Unigene MembersMember information