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Information for unigene UN27997

FASTA Sequence
Unigene ID: UN27997Length: 1188 SSR 
AGTGTTTGAATCTCCCATCAACTTGATCTTATACCAACAACTTCAGCTTATTTCAAGATGATGTAAAGTGATACATATATAATAAT
CATCTCCAACGATTTAAAACCAAAAGACAAAAGAAAGAATCATAAGCATACATTAAGCCCCCAATAACGTTAACTCACATCATTCC
TCCCAACTATATATATTTAACTAAATTTGTTATTTTTTTTCCTGGTTTTTGGTATATAAATCTGCTAGATTTTCCTATTTCAATAT
CTTCTTATGTTTTCAGAGAGAGAGAGACAAGGAAGATCCCTTTCTTACTTGTGGTTTTCTTCAGCTGTTCTGAGATGATGACTTGC
TCTTCTTAGCTTTATTCTTCTCTTGTATCTTCTTTTTCTTCTCTTCAGATGTGATCCAGTTGTAACCCCTTGGAATCGCAAATGGG
TCTTGGTCGTTTTCAGCTTTACCACTACTACTAAACCCTCCAGAACTAAAGCTTGCTGATGGACGTTGGCTAGGTGTTTTGATCCA
CTGAAACCATGAGGAGGACGATGAGCTTGATAACCCTTGTATTGTTTCCTCTCTAGGACTGTTCCTGACGTTGGAAGTAGGGCTTG
ATGGTGGCGTTACAAACTCATCTTCAATAGCTTCTAGCTCTTCAAACTTTGTAAACGTAACAAGCACTCTAATCGTAGGGATCACC
GGAATAGCCACCTTGACAGGGAATGTTCCGGATGGTAGTTTAGTGGTAATAAGTCCCTCAAACGCCGTATCGCTTTGACTTTATTT
GCAAGGATATCAAGCAGGGGAAGAAGCTCCTTTGTCTGTAATGGGAATCTCTCGGAAAGCCAAAGAACCGGTCTTAGTCCTTTCTT
GTACTCGTTCTCTCTGCTACAGCTACTACTACCATCCTTTCTCTTACTACTACTCCCGCTTCCTTCTGATGTTGAAGCTTTTGACG
CATCTCTCGTGAGTGTATTAGCTGTTGAGTGTCTTCCAGGTTTTATCTGTCTCCCATCGTCTTCAAGAAGATCACTTACTTTCTCA
TCAACACAAAGCGAACTTCTCGGAGGAACACTACTTCGTTTGCTGTGACCTTCCTCCCGTTTCCTCCACCCACCAAACCATCCTTT
CTTCTCCTGTTTGCAACACCCGTTCCCATCCATTATAGGAATGTCCCTGTCCACACGAGAAGTGTTACAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_563716 ankyrin repeat-containing protein [Arabidopsis thaliana]5953e-059
AAF40458 Contains similarity to the KE03 protein gb|AF064604 from Homo sapiens and to Ank repeat family PF|00023 [Arabidopsis thaliana]5953e-059
AAM61347 unknown [Arabidopsis thaliana]5953e-059
XP_002892242 hypothetical protein ARALYDRAFT_470463 [Arabidopsis lyrata subsp. lyrata]5901e-058
AAO29961 Unknown protein [Arabidopsis thaliana]5731e-056

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8GXW8 Putative uncharacterized protein At1g04780/F13M7_205952e-059
Q8LFL1 Putative uncharacterized protein5952e-059
Q9MAS7 F13M7.23 protein5952e-059
Q84WH9 Putative uncharacterized protein At1g04780 (Fragment)5738e-057
B9RWL2 Protein binding protein, putative4285e-040

Arabidopsis top hits (Blast detail)Scoree value
AT1G04780.1 ankyrin repeat family protein5994e-062
AT3G24210.1 ankyrin repeat family protein2544e-022
AT3G04470.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G04780.1); Has 842 Blast hits to 642 proteins in 95 species: Archae - 0; Bacteria - 6; Metazoa - 523; Fungi - 26; Plants - 165; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).2331e-019
AT1G62050.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 967 Blast hits to 722 proteins in 118 species: Archae - 0; Bacteria - 24; Metazoa - 556; Fungi - 45; Plants - 193; Viruses - 2; Other Eukaryotes - 147 (source: NCBI BLink).2016e-016
AT1G11740.1 ankyrin repeat family protein1675e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  33%
 
82  67%

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