 |
Information for unigene UN28031
| FASTA Sequence |
| Unigene ID: UN28031 | Length: 1639 |
SSR | | GGCAGAGAAAGGTGTGGTAGTGGGAAGGCTCATATTCAGTGACAACGGAGACATGATAGACTGCACAAAGATGGGAATGGGTGGGA
AAGCTATTCCACCTAACATCGACAGGGTTGGAGATATGCAGAGTGATGCTATGTTCATACTCTTAGTTGAGAAAGATGCAGCTTAC
ATAAGGTTAGCTGAAGACAGATTCTACAACCGTTTCCCCTGCATCATCGTCACTGCAAAAGGCCAGCCCGATGTGGCCACGAGGCT
GTTCTTGAGGAAGATGAAAATGGAGCTTAAGCTTCCGGTGCTTGCCTTGGTGGATAGTGATCCTTACGGGTTGAAGATCTTGTCTG
TTTATGGGTGCGGCTCGAAGAACATGTCTTACTATAGTGCAAACTTGACTACACCTGATATTAAGTGGCTTGGGATCAGACCAAGT
GATTTGGACAAGTACAAGATACCTGAGCAGTGTAGGTTGCCAATGACTGAGCAGGATATCAAGACCGGGAAGGATATGCTAGAGGA
GGATTTCGTGAAGAAGAATCCTGGGTGGGTCGAAGAACTTAACCTGATGGTGAAAACAAAGCAGAAGGCTGAGATTCAGGCGTTGA
GTTCTTTTGGTTTCCAGTATTTATCAGAAGTTTACTTGCCCTTGAAACTGCAGCAGCAGGATTGGCTCTGATCTTCTGGTTGCTGT
GTTACTGAGTTACTGTTCAATTAGAGACCAACAAGTTTACTGATGGGAGTTATTGCAATTTAAATTGTGTTGTATTGGTTTACACA
GAACTGGGAAACTATTTGTAAGCTGCTTTATTCTGAATGTACACAGATATTTGCATCGAGATATTGCAATCTTTACTCATTATTTT
CTGCAATTTAGTTTGAAATTTGCATAAAATACAAAGATGATTAGTTATATGTACCAGTCAGGATCAACTACTTTTTGCGCTGCAAC
CACTTATGCAAAGACGCCTTTGTCACCATCAACCTCTCTAGAATTGCAGGCCTCCTCGTTGAAAATATACCAACAATCCACTTGGT
GTTCTTTGAAGTATGTTCTGTATTTTGGTCTGCATCATCCACATGCTGGGCATCCTGTGTTATATCTAGCACAGGTCTTTGTCTAG
CAGGAAGAACCACAAGAGACAATTCATCTTTTAGGAGCTTTACTAGCACATCTTTCACATCAATCTCTTGCTTCCCTGAATCGGTA
TTTGCTTCACAGGTTCCTAGGATGATCACCAAATCATCTTTCACAACATCACCTCGCGTATAGTCTTCCTTGATCATTCGCAAAAC
TGCTAGAACAACAAGTCTAGCCTCAACCTTGGTAAGTCCTTGAAGGTCAATTGCAAGGTGTCCGGATGTTCTCTCTTGCAAGTGTC
TAGCTACTTTTTCAATGAGTAGACTTACAGGTCTCCCAGAGTCAGTACCTTCCTGGTCGCTTGCTTTGTTTATGCTTTGGCTGTGC
TCCGGTGCGGTGGCGTAGCAGCGACGGTGATGGTGGTGGTGAGGATTGGTTATGACGGAGGAGGAGGAGCCGAAGACGATGACAAG
GTCTCTCATTCCTCGCCAACGGTTGAGATCATCATCATCATCAATCACTGGTGGCTCACTCTCTCTGCTTTTTATTTTATTTTTAT
TTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195902 DNA topoisomerase 6 subunit A [Arabidopsis thaliana] | 1150 | 2e-123 |
| XP_002326329 predicted protein [Populus trichocarpa] | 1133 | 2e-121 |
| XP_002274790 PREDICTED: hypothetical protein [Vitis vinifera] | 1133 | 2e-121 |
| CBI32617 unnamed protein product [Vitis vinifera] | 1133 | 2e-121 |
| XP_002525197 meiotic recombination protein spo11, putative [Ricinus communis] | 1131 | 4e-121 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LZ03 DNA topoisomerase 6 subunit A | 1150 | 9e-125 |
| Q8GYL7 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic | 603 | 2e-061 |
| Q9Y5K1 Meiotic recombination protein SPO11 | 464 | 3e-045 |
| Q9WTK8 Meiotic recombination protein SPO11 | 464 | 3e-045 |
| Q9M4A2 Meiotic recombination protein SPO11-1 | 450 | 1e-043 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9MT76 Predicted protein | 1133 | 1e-121 |
| B9SGS8 Meiotic recombination protein spo11, putative | 1131 | 2e-121 |
| C5WNM1 Putative uncharacterized protein Sb01g038780 | 1012 | 2e-107 |
| B4FX18 Putative uncharacterized protein | 1009 | 3e-107 |
| B6U252 RHL2 | 1009 | 3e-107 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G02820.1 RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding | 1151 | 6e-126 |
| AT5G02830.1 pentatricopeptide (PPR) repeat-containing protein | 608 | 6e-063 |
| AT3G13170.1 ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic | 450 | 1e-044 |
| AT1G63990.1 SPO11-2 (SPORULATION 11-2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic | 382 | 9e-037 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
