Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN28040

FASTA Sequence
Unigene ID: UN28040Length: 867 SSR 
AGCACAACCACAACAACAACAACAAAACGTTTTGATCAAAAGAGAAAAAAACACTGTTAAACCCTCCCAAAACTTCATCAAAACAC
ACAAGTAACCTGCGATCGATACCCGCCATGATTAGTCTCTGAAGGAGGTTGATGATTCTGGGTTACTTCATCATGGGAGGAGCTTG
TTCAAGGAAGAGAGATCAACACGTTGAGGATATTCTAAACAGAGGTGTCTCTGGGAAATACAGCAAGAGTTCGAGTTCGAAATGGT
TGGCTACTTCGCTCTCTAGGTCAGGCTCTGGTGTTAAACGGACTAGTAATGGAGAGTGCCCTTCGCTTCTGGAGCTCTGTGTCCGC
AAGATACAGGAGGACGTGGATAAATACAGTACATTCTCTGACTTACCTAGAGATATAAGTCAGCAGATCTTTGATGAGTTGGTGTG
TTCCCAACGATTAACTCTGAAGAATCTCGAGGCATTTCGAGACTGTGCAATCCAGGATCTTAACTTGGGAGAATACCCTGGAGTTA
ATGATGAGTGGATGGATGTCATCTCCTCGCAAAGGACATCACTGCTTTCTGTTGATTTCTCGGGGTCTGATATCACGGACTCTGGT
TTGGTTTCTTTAAAAGGTTGCAAGAACCTGGAATCCTTAAACTTTAATTTCTGTGACCAGATATCAAACCGCGGTCTGGAGCATCT
TAGCGGGCTCTCAAACTTGACAAGCCTGAGCTTCAGAAGAAATGCTGCAATCACTGCACAAGGCATGCGTGCCTTTTCCAACTTGG
TTAACATGAAGAAGCTAGATCTTGAGAAGTGTCCCGGCATTCACGATGGGCTCGTTCACCTGCGAGGTTTAACCAAATTAGAGTCC
TTGAACA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAF82144 Contains similarity to F-box protein FBL2 from Homo sapiens gb|AF176518 and contains multiple Leucine Rich PF|00560 repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681, gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378, gb|AA007067, gb|T46145, gb|T22090, gb|AI995016, gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from this gene [Arabidopsis thaliana]11078e-119
NP_563980 leucine-rich repeat-containing protein [Arabidopsis thaliana]11023e-118
AAK28636 unknown protein [Arabidopsis thaliana]11023e-118
XP_002890123 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]10933e-117
XP_002270172 PREDICTED: hypothetical protein [Vitis vinifera]8622e-090

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8H1Q4 Putative uncharacterized protein At1g1574011076e-119
Q9C5C9 Putative uncharacterized protein At1g1574011076e-119
Q9LMR0 F7H2.8 protein11076e-119
B2LUQ9 F-box-containing protein 17733e-080
B9T244 Protein binding protein, putative7545e-078

Arabidopsis top hits (Blast detail)Scoree value
AT1G15740.1 leucine-rich repeat family protein11073e-121
AT4G23840.1 leucine-rich repeat family protein1342e-008
AT1G54470.1 RPP27 (resistance to Peronospora parasitica 27); protein binding1182e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
191  33%
 
182  67%

Unigene MembersMember information