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Information for unigene UN28062
| FASTA Sequence |
| Unigene ID: UN28062 | Length: 1296 |
SSR | | AAAATGAAAAGGAGATTAAATACCATGTAGAGTTGTAGAACTAGCGTAATAATACATTGAACAAAACACTAAACAGGTAGATCCCA
ACAGCTTCCAAGTAGTACTTTACAAATAATATTATTAAACCTCATCTCTATAGAAAAAAAAAAGCATTTCATCCTTCGTCTAATAG
CCAGGGATTTCACCTGGTACTGGAGCCAACTCGTTCTTACTGAATTTGGATTCATCGTAAAACGTTGCACGTACCGTCCTTCCTCC
AAAGAATCGCCCATCAAGGTCCACAAGGGCTTTAGTTGTTTCCTCAGGCCTTGAAAACTGAACAAAGATTCTGACTGCTTCGTGTG
TAGGGAAGTTTGGTTGAGTGATCTCGAATATCAGTACACGAGTGACTGTTCCGTATTTGCCACACTCCGATCCCACCTCCTCTTCT
AGCTCATCATCTACTTCTCCTGGTCCAACCATGTTTCTAAGAAGCAAGACCCTGGTTGGTTCACCACTGATATTCACACCCTTGAC
GACGGCAGCGACAACCTTCTTCTCGCTAGCATTGACAATGACACCAGCTCTCCGATCAGTCTTCTTCGCCATCAACGGCGTCGTGA
TCCCTTGCTCAGATTTCCCAAGCCCCTGCCCTTGTTTCCACCCCATCTTCGCCATCATCCTCTCCGCCGCCGTCATCTGCCCCCCC
GCCCCGACTCCCAACCCGCTCGTCTCCGACGTCCCCATGCTAAACCCGTCGTCGACGCCGTTCCCCGCATGCGGCGGAGGAGAAGA
GGATCTTCCACGCTTCCCACCGCTCATGGCGGCGCGTCTCTTCCACGCCTCCTCGCCGGAGATGTTCAGCGGAGTCTGGTGATGAT
CGAAACGCTCTCTTTCTCTTTCCCTCTCCTTCTTCTTCTCCATCTCTTCCCTCTCCTCCTCCTCGCGCCGTCTCTTGTCGAGCTCC
CGCTTCATCTCCGCTTCCATGGCTTTCTTCTTCTTCTCGCGCCGGTACTCCTCGTAGTCGTTCGGTCTCGCCGGATCGTACTCTTC
GATCACCGATGATGTCACGCCGACCAACGCCGGTTGCGACGGCGGCGCCGGAGTGATAATCGATTGTGTAGGAGGAGGAGGAGGAG
GAGGAGGCTTGTACTGAGGCTTGGGCTTGCTCTGAGGTCTGATGATGGTCTGCGTCGGAGCAAAAGCGGGTGGTTTGCGAAGCGTA
GGCGGCGCCATCTTGGTGCTGCTTGACCAGACGGAGGAGGAAGAGGAGTTTCCGGTGGGTTTGTCATCATCTGACGGCGGAGGGAG
ATCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890874 hypothetical protein ARALYDRAFT_473276 [Arabidopsis lyrata subsp. lyrata] | 1509 | 4e-165 |
| NP_174336 DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] | 1507 | 6e-165 |
| AAA73382 unnamed protein product [Arabidopsis thaliana] | 1360 | 7e-148 |
| XP_002281743 PREDICTED: hypothetical protein [Vitis vinifera] | 1279 | 2e-138 |
| XP_002523197 DNA-damage repair protein drt111, putative [Ricinus communis] | 1257 | 6e-136 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42698 DNA-damage-repair/toleration protein DRT111, chloroplastic | 1537 | 9e-170 |
| Q96I25 Splicing factor 45 | 372 | 1e-034 |
| Q8JZX4 Splicing factor 45 | 370 | 2e-034 |
| Q2HJG2 Poly(U)-binding-splicing factor PUF60 | 229 | 4e-018 |
| Q3UEB3 Poly(U)-binding-splicing factor PUF60 | 229 | 4e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SB37 DNA-damage repair protein drt111, putative | 1257 | 4e-136 |
| C5Z4F1 Putative uncharacterized protein Sb10g003990 | 1205 | 5e-130 |
| B4FLF6 Putative uncharacterized protein | 1202 | 1e-129 |
| B9GGD6 Predicted protein | 1201 | 1e-129 |
| B6TI71 Splicing factor 45 | 1197 | 4e-129 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G30480.1 DRT111; nucleic acid binding / nucleotide binding | 1538 | 6e-171 |
| AT3G09850.1 D111/G-patch domain-containing protein | 127 | 3e-007 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 126 | 3e-007 |
| AT1G31810.1 actin binding | 124 | 6e-007 |
| AT3G54230.1 nucleic acid binding / nucleotide binding / zinc ion binding | 119 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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