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Information for unigene UN28064
| FASTA Sequence |
| Unigene ID: UN28064 | Length: 1487 |
SSR | | CAACAAAAACACAGTTTACACATATATATATATGCTCGTCTCCAAAGACAATCATCAGCAAACAAGGTATAGAGAAACATTGTATC
AAATATTGGATGATAAGTAGTATGCAGAGTAACTTTAAACCGGTATTGTTTAGATGCATCGAAGAACATGAGATGTTCTGATTCAG
TCTCCACGCCTTCTCTTTCCGTAGTCAGCATCTCTTGACCTGGACCTATGATCATCTTCCGACATTCTTGACCTGCTTCGAGACTT
GGAAGAAGATTGTCCTCTATCGTACTCTTCAGAAACACGGTGCCTATACTCGCGGTGACTATCTTTCTCTTCGCGGTGACTCTTGT
GTCTTCTATCACCACCACTGCTCTCAGACCAGTCACGTTCTGTGGTAGCTCGTTCTTTCTCTCGTGATGGCTGCTTCTCTTCTTTC
TCTTGGTTTTCATCTTCATAGCCACCGTATTCAGAACCACCCTCTTCACCACCGCCTCCTCCTCCACTAGCCTCGTTCCACATCCC
TGCTGCGTGAACTCCGTTCATCCCTGAGTTCCCCATCGTTCCCATTCCCGCGCCACCGAAAAAGGCGAGGTTAACGTGAGGAGCAA
TCCCGACCATTCCCATTGGATTCACACCGGGATAAGGTTGAGGCATCCCGGGGTAAGCAAGACCTGGAAACCCTCCATAACCAGCA
CCACGACCCATGAATGTAGGATCAAACCCACCAGCTCCCATCATACCCTGAGGATGCATCATACCACCAAACGCTGGACCAGCAAG
TCCAGGGCCATAAGGTCCAGCACCAGCACCGTTAGCCATGTTGTTTATCCCTCTTCCTCTCGCTGCACCACCCCAATGACCTCCAC
GGTTTCCCATTCCTTGGCCACCACGTGCAAACCCACCTCCTCTCCCATAGTTTCTTCCACCGTCTCCATTTTGCGTATTCATGTTG
TTGTTGTTGTTGTTGTTATTGTTGTTACCTCTTCCCATTCCCTCATTCAGAGGCCTTCTGTTTTGCATTTGGTTCTGTCCTTGGTT
CCTCCCAGTGAAATTAGCTCCCATCTGCTTCAGTGTTTCAGGAGAAGCAAAGGCCACAACACATGCTTTACCGTTGAAAACAAAAC
CATTCATTCCTTCTTTGCAAGCGGCAGCAGCAGCTGAATCATAAAACTCAACCTGACAATACCCTTTGGATTTACCACTAACTCTC
TCGTCAAAAAACTTGATCTCTTTGACTCTTCCATACTGAGAAAGCACACTCTCGATCTCTGCATCCGTCGTCCACCAGTGTAACTC
TCCAACGAAAAGCATGGTGTTCCCATTGTCCACAACAAACGGCTGCGTCGTCGGGCTTCTGTTTACCATTGCATTTGGATTCACAC
TCGTCTGGCTAACAGGGATCTGTTGAGCACCTTGAGGAGGAGGACCACCACCGTAGGGGGTTGTATGCACAGGCGTCGGCTCCGGC
GCGGGCACATTCACCACCGCGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_172778 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1952 | 2e-216 |
| XP_002889992 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 1921 | 8e-213 |
| XP_002282072 PREDICTED: hypothetical protein [Vitis vinifera] | 1240 | 7e-134 |
| XP_002515040 RNA binding protein, putative [Ricinus communis] | 1189 | 6e-128 |
| XP_002312652 predicted protein [Populus trichocarpa] | 1113 | 4e-119 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P51992 Heterogeneous nuclear ribonucleoprotein A3 homolog 2 | 201 | 9e-015 |
| P49310 Glycine-rich RNA-binding protein GRP1A | 187 | 4e-013 |
| P03211 Epstein-Barr nuclear antigen 1 | 185 | 7e-013 |
| Q3KSS4 Epstein-Barr nuclear antigen 1 | 178 | 4e-012 |
| P49311 Glycine-rich RNA-binding protein GRP2A | 178 | 4e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SAF2 F3F19.21 protein | 1958 | 3e-217 |
| B9RMS1 RNA binding protein, putative | 1189 | 4e-128 |
| B9HLD1 Predicted protein | 1113 | 3e-119 |
| B9HTF7 Predicted protein | 1105 | 2e-118 |
| Q9FM71 Genomic DNA, chromosome 5, P1 clone:MDF20 | 730 | 7e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G13190.1 RNA recognition motif (RRM)-containing protein | 1959 | 1e-219 |
| AT5G55670.1 RNA recognition motif (RRM)-containing protein | 730 | 4e-077 |
| AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 168 | 5e-012 |
| AT2G21660.2 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 166 | 9e-012 |
| AT1G31290.1 PAZ domain-containing protein / piwi domain-containing protein | 160 | 4e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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